Analysis of interatomic Contacts of Structural Units in PDB entry:
4PEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PEF entry

There are 5 chains in PDB entry 4PEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5ILE 353
B
 GLN 5ILE 353
C
 GLN 5ILE 353
D
 GLN 5ILE 353
E
 GLN 5ILE 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 93 helices in PDB entry 4PEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 34Right-handed alpha
Helix 2
AA2
A
51 58Right-handed 310
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
69 75Right-handed alpha
Helix 5
AA5
A
93 100Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
160 166Right-handed alpha
Helix 9
AA9
A
185 190Right-handed 310
Helix 10
AB1
A
191 199Right-handed alpha
Helix 11
AB2
A
200 209Right-handed 310
Helix 12
AB3
A
211 222Right-handed alpha
Helix 13
AB4
A
252 254Right-handed 310
Helix 14
AB5
A
272 282Right-handed alpha
Helix 15
AB6
A
282 287Right-handed alpha
Helix 16
AB7
A
298 305Right-handed alpha
Helix 17
AB8
A
307 322Right-handed alpha
Helix 18
AB9
A
332 352Right-handed alpha
Helix 19
AC1
B
18 34Right-handed alpha
Helix 20
AC2
B
51 58Right-handed 310
Helix 21
AC3
B
61 65Right-handed 310
Helix 22
AC4
B
69 75Right-handed alpha
Helix 23
AC5
B
93 100Right-handed alpha
Helix 24
AC6
B
134 138Right-handed 310
Helix 25
AC7
B
147 153Right-handed 310
Helix 26
AC8
B
160 166Right-handed alpha
Helix 27
AC9
B
185 190Right-handed 310
Helix 28
AD1
B
191 199Right-handed alpha
Helix 29
AD2
B
200 206Right-handed alpha
Helix 30
AD3
B
207 209Right-handed 310
Helix 31
AD4
B
211 222Right-handed alpha
Helix 32
AD5
B
252 254Right-handed 310
Helix 33
AD6
B
272 282Right-handed alpha
Helix 34
AD7
B
282 287Right-handed alpha
Helix 35
AD8
B
298 305Right-handed alpha
Helix 36
AD9
B
307 322Right-handed alpha
Helix 37
AE1
B
332 351Right-handed alpha
Helix 38
AE2
C
18 34Right-handed alpha
Helix 39
AE3
C
51 58Right-handed 310
Helix 40
AE4
C
61 65Right-handed 310
Helix 41
AE5
C
69 75Right-handed alpha
Helix 42
AE6
C
93 100Right-handed alpha
Helix 43
AE7
C
134 138Right-handed 310
Helix 44
AE8
C
147 153Right-handed 310
Helix 45
AE9
C
160 166Right-handed alpha
Helix 46
AF1
C
185 190Right-handed 310
Helix 47
AF2
C
191 199Right-handed alpha
Helix 48
AF3
C
200 204Right-handed 310
Helix 49
AF4
C
205 209Right-handed 310
Helix 50
AF5
C
211 222Right-handed alpha
Helix 51
AF6
C
252 254Right-handed 310
Helix 52
AF7
C
272 282Right-handed alpha
Helix 53
AF8
C
282 287Right-handed alpha
Helix 54
AF9
C
298 304Right-handed alpha
Helix 55
AG1
C
307 322Right-handed alpha
Helix 56
AG2
C
332 352Right-handed alpha
Helix 57
AG3
D
18 34Right-handed alpha
Helix 58
AG4
D
51 58Right-handed 310
Helix 59
AG5
D
61 65Right-handed 310
Helix 60
AG6
D
69 75Right-handed alpha
Helix 61
AG7
D
93 100Right-handed alpha
Helix 62
AG8
D
134 138Right-handed 310
Helix 63
AG9
D
147 151Right-handed 310
Helix 64
AH1
D
159 166Right-handed alpha
Helix 65
AH2
D
185 190Right-handed 310
Helix 66
AH3
D
191 199Right-handed alpha
Helix 67
AH4
D
200 204Right-handed 310
Helix 68
AH5
D
205 209Right-handed 310
Helix 69
AH6
D
211 222Right-handed alpha
Helix 70
AH7
D
252 254Right-handed 310
Helix 71
AH8
D
272 282Right-handed alpha
Helix 72
AH9
D
282 287Right-handed alpha
Helix 73
AI1
D
298 305Right-handed alpha
Helix 74
AI2
D
307 322Right-handed alpha
Helix 75
AI3
D
332 352Right-handed alpha
Helix 76
AI4
E
18 34Right-handed alpha
Helix 77
AI5
E
51 58Right-handed 310
Helix 78
AI6
E
61 65Right-handed 310
Helix 79
AI7
E
69 75Right-handed alpha
Helix 80
AI8
E
93 100Right-handed alpha
Helix 81
AI9
E
134 138Right-handed 310
Helix 82
AJ1
E
147 151Right-handed 310
Helix 83
AJ2
E
160 166Right-handed alpha
Helix 84
AJ3
E
185 190Right-handed 310
Helix 85
AJ4
E
191 199Right-handed alpha
Helix 86
AJ5
E
200 204Right-handed 310
Helix 87
AJ6
E
205 209Right-handed 310
Helix 88
AJ7
E
211 222Right-handed alpha
Helix 89
AJ8
E
272 282Right-handed alpha
Helix 90
AJ9
E
283 287Right-handed 310
Helix 91
AK1
E
298 304Right-handed alpha
Helix 92
AK2
E
307 322Right-handed alpha
Helix 93
AK3
E
332 350Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 4PEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
110 112anti-parallel
Strand 3
A
84 86parallel
Strand 4
A
37 42parallel
Strand 5
A
6 12parallel
Strand 6
A
256 262anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 239first strand
Strand 2
A
242 246anti-parallel
Strand 3
A
225 228parallel
Strand 4
A
176 179parallel
Strand 5
A
124 129parallel
Strand 6
A
116 121anti-parallel
Strand 7
A
270 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
110 112anti-parallel
Strand 3
B
84 86parallel
Strand 4
B
37 42parallel
Strand 5
B
6 12parallel
Strand 6
B
256 262anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 239first strand
Strand 2
B
242 246anti-parallel
Strand 3
B
225 228parallel
Strand 4
B
176 179parallel
Strand 5
B
124 129parallel
Strand 6
B
116 121anti-parallel
Strand 7
B
270 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 107first strand
Strand 2
C
110 112anti-parallel
Strand 3
C
84 86parallel
Strand 4
C
37 42parallel
Strand 5
C
6 12parallel
Strand 6
C
256 262anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
235 239first strand
Strand 2
C
242 246anti-parallel
Strand 3
C
225 228parallel
Strand 4
C
176 179parallel
Strand 5
C
124 129parallel
Strand 6
C
116 121anti-parallel
Strand 7
C
270 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 143first strand
Strand 2
C
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 107first strand
Strand 2
D
110 112anti-parallel
Strand 3
D
84 86parallel
Strand 4
D
37 42parallel
Strand 5
D
6 12parallel
Strand 6
D
256 262anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
235 239first strand
Strand 2
D
242 246anti-parallel
Strand 3
D
225 228parallel
Strand 4
D
176 179parallel
Strand 5
D
124 129parallel
Strand 6
D
116 121anti-parallel
Strand 7
D
270 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
142 143first strand
Strand 2
D
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
104 107first strand
Strand 2
E
110 112anti-parallel
Strand 3
E
84 86parallel
Strand 4
E
37 42parallel
Strand 5
E
6 12parallel
Strand 6
E
256 262anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
235 239first strand
Strand 2
E
242 246anti-parallel
Strand 3
E
225 228parallel
Strand 4
E
176 179parallel
Strand 5
E
124 129parallel
Strand 6
E
116 121anti-parallel
Strand 7
E
270 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
142 143first strand
Strand 2
E
291 292anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il