Analysis of interatomic Contacts of Structural Units in PDB entry:
4PFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PFP entry

There are 2 chains in PDB entry 4PFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ILE 789
C
 LYS 5VAL 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 4PFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 48Right-handed 310
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
69 83Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
126 142Right-handed alpha
Helix 6
AA6
A
156 173Right-handed alpha
Helix 7
AA7
A
176 185Right-handed alpha
Helix 8
AA8
A
185 193Right-handed alpha
Helix 9
AA9
A
232 236Right-handed 310
Helix 10
AB1
A
245 255Right-handed alpha
Helix 11
AB2
A
256 263Right-handed alpha
Helix 12
AB3
A
267 271Right-handed 310
Helix 13
AB4
A
284 291Right-handed alpha
Helix 14
AB5
A
292 296Right-handed 310
Helix 15
AB6
A
297 304Right-handed alpha
Helix 16
AB7
A
312 328Right-handed alpha
Helix 17
AB8
A
330 348Right-handed alpha
Helix 18
AB9
A
368 380Right-handed alpha
Helix 19
AC1
A
382 391Right-handed alpha
Helix 20
AC2
A
412 441Right-handed alpha
Helix 21
AC3
A
467 489Right-handed alpha
Helix 22
AC4
A
489 499Right-handed alpha
Helix 23
AC5
A
511 520Right-handed alpha
Helix 24
AC6
A
524 535Right-handed alpha
Helix 25
AC7
A
539 551Right-handed alpha
Helix 26
AC8
A
559 563Right-handed 310
Helix 27
AC9
A
565 569Right-handed 310
Helix 28
AD1
A
572 574Right-handed 310
Helix 29
AD2
A
592 597Right-handed alpha
Helix 30
AD3
A
602 611Right-handed alpha
Helix 31
AD4
A
614 621Right-handed alpha
Helix 32
AD5
A
642 660Right-handed alpha
Helix 33
AD6
A
681 692Right-handed alpha
Helix 34
AD7
A
697 703Right-handed alpha
Helix 35
AD8
A
711 720Right-handed alpha
Helix 36
AD9
A
723 728Right-handed alpha
Helix 37
AE1
A
730 742Right-handed alpha
Helix 38
AE2
A
762 771Right-handed alpha
Helix 39
AE3
A
773 789Right-handed alpha
Helix 40
AE4
C
46 48Right-handed 310
Helix 41
AE5
C
61 65Right-handed 310
Helix 42
AE6
C
69 83Right-handed alpha
Helix 43
AE7
C
108 116Right-handed alpha
Helix 44
AE8
C
126 142Right-handed alpha
Helix 45
AE9
C
156 173Right-handed alpha
Helix 46
AF1
C
176 185Right-handed alpha
Helix 47
AF2
C
185 193Right-handed alpha
Helix 48
AF3
C
232 236Right-handed 310
Helix 49
AF4
C
245 255Right-handed alpha
Helix 50
AF5
C
256 263Right-handed alpha
Helix 51
AF6
C
267 271Right-handed 310
Helix 52
AF7
C
284 291Right-handed alpha
Helix 53
AF8
C
292 296Right-handed 310
Helix 54
AF9
C
297 304Right-handed alpha
Helix 55
AG1
C
312 328Right-handed alpha
Helix 56
AG2
C
330 348Right-handed alpha
Helix 57
AG3
C
368 379Right-handed alpha
Helix 58
AG4
C
382 391Right-handed alpha
Helix 59
AG5
C
412 441Right-handed alpha
Helix 60
AG6
C
467 489Right-handed alpha
Helix 61
AG7
C
490 499Right-handed alpha
Helix 62
AG8
C
511 520Right-handed alpha
Helix 63
AG9
C
524 534Right-handed alpha
Helix 64
AH1
C
539 551Right-handed alpha
Helix 65
AH2
C
559 563Right-handed 310
Helix 66
AH3
C
565 569Right-handed 310
Helix 67
AH4
C
572 574Right-handed 310
Helix 68
AH5
C
592 597Right-handed alpha
Helix 69
AH6
C
602 611Right-handed alpha
Helix 70
AH7
C
614 621Right-handed alpha
Helix 71
AH8
C
642 660Right-handed alpha
Helix 72
AH9
C
681 692Right-handed alpha
Helix 73
AI1
C
693 702Right-handed alpha
Helix 74
AI2
C
711 719Right-handed alpha
Helix 75
AI3
C
723 728Right-handed alpha
Helix 76
AI4
C
730 742Right-handed alpha
Helix 77
AI5
C
762 771Right-handed alpha
Helix 78
AI6
C
773 788Right-handed alpha
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There are 14 sheets in PDB entry 4PFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
15 25anti-parallel
Strand 4
A
7 11anti-parallel
Strand 5
A
49 50anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
662 669parallel
Strand 4
A
145 150parallel
Strand 5
A
451 456parallel
Strand 6
A
207 214anti-parallel
Strand 7
A
220 228anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
203 204anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
362 364anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
408 410anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
576 581anti-parallel
Strand 3
A
584 589anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 710first strand
Strand 2
A
755 758anti-parallel
Strand 3
A
749 751anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 44first strand
Strand 2
C
28 33anti-parallel
Strand 3
C
15 24anti-parallel
Strand 4
C
7 11anti-parallel
Strand 5
C
49 50anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
93 97anti-parallel
Strand 3
C
662 669parallel
Strand 4
C
145 150parallel
Strand 5
C
450 456parallel
Strand 6
C
207 214anti-parallel
Strand 7
C
220 228anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 195first strand
Strand 2
C
203 204anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
352 354first strand
Strand 2
C
362 364anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
392 395first strand
Strand 2
C
407 410anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
557 558first strand
Strand 2
C
576 581anti-parallel
Strand 3
C
584 589anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
707 710first strand
Strand 2
C
755 758anti-parallel
Strand 3
C
749 751anti-parallel
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