Analysis of interatomic Contacts of Structural Units in PDB entry:
4PG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PG5 entry

There are 2 chains in PDB entry 4PG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 427
B
 MET 1LEU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4PG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
25 34Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
63 69Right-handed alpha
Helix 5
AA5
A
85 96Right-handed alpha
Helix 6
AA6
A
108 122Right-handed alpha
Helix 7
AA7
A
159 173Right-handed alpha
Helix 8
AA8
A
175 186Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
199 215Right-handed alpha
Helix 11
AB2
A
219 223Right-handed 310
Helix 12
AB3
A
232 243Right-handed alpha
Helix 13
AB4
A
272 277Right-handed 310
Helix 14
AB5
A
302 320Right-handed alpha
Helix 15
AB6
A
333 337Right-handed 310
Helix 16
AB7
A
367 379Right-handed alpha
Helix 17
AB8
A
406 413Right-handed alpha
Helix 18
AB9
B
12 25Right-handed alpha
Helix 19
AC1
B
25 32Right-handed alpha
Helix 20
AC2
B
63 69Right-handed alpha
Helix 21
AC3
B
85 96Right-handed alpha
Helix 22
AC4
B
108 122Right-handed alpha
Helix 23
AC5
B
159 173Right-handed alpha
Helix 24
AC6
B
175 186Right-handed alpha
Helix 25
AC7
B
193 198Right-handed alpha
Helix 26
AC8
B
199 215Right-handed alpha
Helix 27
AC9
B
219 223Right-handed 310
Helix 28
AD1
B
232 243Right-handed alpha
Helix 29
AD2
B
272 277Right-handed 310
Helix 30
AD3
B
302 320Right-handed alpha
Helix 31
AD4
B
367 379Right-handed alpha
Helix 32
AD5
B
406 413Right-handed alpha
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There are 4 sheets in PDB entry 4PG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
35 43parallel
Strand 3
A
2 9parallel
Strand 4
A
75 78parallel
Strand 5
A
99 102parallel
Strand 6
A
126 128parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
258 269parallel
Strand 3
A
244 255anti-parallel
Strand 4
A
151 157anti-parallel
Strand 5
A
281 288anti-parallel
Strand 6
A
294 299anti-parallel
Strand 7
B
294 298anti-parallel
Strand 8
B
282 288anti-parallel
Strand 9
B
151 157anti-parallel
Strand 10
B
244 255anti-parallel
Strand 11
B
258 269anti-parallel
Strand 12
B
224 225parallel
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There are 18 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 391first strand
Strand 2
A
394 402anti-parallel
Strand 3
A
355 362anti-parallel
Strand 4
A
416 424anti-parallel
Strand 5
A
258 269parallel
Strand 6
A
244 255anti-parallel
Strand 7
A
151 157anti-parallel
Strand 8
A
281 288anti-parallel
Strand 9
A
294 299anti-parallel
Strand 10
B
294 298anti-parallel
Strand 11
B
282 288anti-parallel
Strand 12
B
151 157anti-parallel
Strand 13
B
244 255anti-parallel
Strand 14
B
258 269anti-parallel
Strand 15
B
416 424parallel
Strand 16
B
355 362anti-parallel
Strand 17
B
394 402anti-parallel
Strand 18
B
384 391anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
37 43parallel
Strand 3
B
4 9parallel
Strand 4
B
75 78parallel
Strand 5
B
99 102parallel
Strand 6
B
126 128parallel
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