Analysis of interatomic Contacts of Structural Units in PDB entry:
4PGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PGG entry

There are 2 chains in PDB entry 4PGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3LYS 362
B
 ALA 3LYS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4PGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 25Right-handed alpha
Helix 2
AA2
A
27 40Right-handed alpha
Helix 3
AA3
A
40 48Right-handed alpha
Helix 4
AA4
A
54 61Right-handed alpha
Helix 5
AA5
A
70 84Right-handed alpha
Helix 6
AA6
A
107 113Right-handed 310
Helix 7
AA7
A
121 129Right-handed alpha
Helix 8
AA8
A
130 135Right-handed alpha
Helix 9
AA9
A
136 138Right-handed 310
Helix 10
AB1
A
139 147Right-handed alpha
Helix 11
AB2
A
149 156Right-handed alpha
Helix 12
AB3
A
158 163Right-handed alpha
Helix 13
AB4
A
166 192Right-handed alpha
Helix 14
AB5
A
210 220Right-handed alpha
Helix 15
AB6
A
230 235Right-handed alpha
Helix 16
AB7
A
265 269Right-handed 310
Helix 17
AB8
A
270 285Right-handed alpha
Helix 18
AB9
A
306 323Right-handed alpha
Helix 19
AC1
A
330 342Right-handed alpha
Helix 20
AC2
B
4 24Right-handed alpha
Helix 21
AC3
B
27 40Right-handed alpha
Helix 22
AC4
B
40 48Right-handed alpha
Helix 23
AC5
B
54 61Right-handed alpha
Helix 24
AC6
B
70 84Right-handed alpha
Helix 25
AC7
B
107 113Right-handed 310
Helix 26
AC8
B
121 129Right-handed alpha
Helix 27
AC9
B
130 135Right-handed alpha
Helix 28
AD1
B
136 138Right-handed 310
Helix 29
AD2
B
139 147Right-handed alpha
Helix 30
AD3
B
149 156Right-handed alpha
Helix 31
AD4
B
158 166Right-handed alpha
Helix 32
AD5
B
166 192Right-handed alpha
Helix 33
AD6
B
210 220Right-handed alpha
Helix 34
AD7
B
230 235Right-handed alpha
Helix 35
AD8
B
265 269Right-handed 310
Helix 36
AD9
B
270 285Right-handed alpha
Helix 37
AE1
B
306 323Right-handed alpha
Helix 38
AE2
B
331 341Right-handed alpha
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There are 5 sheets in PDB entry 4PGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
98 105anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
224 229parallel
Strand 3
A
201 205parallel
Strand 4
A
259 263parallel
Strand 5
A
291 296parallel
Strand 6
A
355 361anti-parallel
Strand 7
A
345 352anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 95first strand
Strand 2
B
98 105anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 247first strand
Strand 2
B
224 229parallel
Strand 3
B
201 205parallel
Strand 4
B
259 263parallel
Strand 5
B
291 296parallel
Strand 6
B
355 361anti-parallel
Strand 7
B
345 352anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 299first strand
Strand 2
B
329 330parallel
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