Analysis of interatomic Contacts of Structural Units in PDB entry:
4PGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PGH entry

There are 4 chains in PDB entry 4PGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9LYS 362
B
 GLU 6LYS 362
C
 ALA 10LYS 362
D
 ALA 5LYS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 4PGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 25Right-handed alpha
Helix 2
AA2
A
27 40Right-handed alpha
Helix 3
AA3
A
40 48Right-handed alpha
Helix 4
AA4
A
55 60Right-handed alpha
Helix 5
AA5
A
70 84Right-handed alpha
Helix 6
AA6
A
108 112Right-handed 310
Helix 7
AA7
A
121 129Right-handed alpha
Helix 8
AA8
A
130 135Right-handed alpha
Helix 9
AA9
A
136 138Right-handed 310
Helix 10
AB1
A
139 147Right-handed alpha
Helix 11
AB2
A
151 156Right-handed alpha
Helix 12
AB3
A
158 163Right-handed alpha
Helix 13
AB4
A
166 192Right-handed alpha
Helix 14
AB5
A
210 220Right-handed alpha
Helix 15
AB6
A
230 235Right-handed alpha
Helix 16
AB7
A
265 269Right-handed 310
Helix 17
AB8
A
270 285Right-handed alpha
Helix 18
AB9
A
306 323Right-handed alpha
Helix 19
AC1
A
331 342Right-handed alpha
Helix 20
AC2
B
7 24Right-handed alpha
Helix 21
AC3
B
27 40Right-handed alpha
Helix 22
AC4
B
40 48Right-handed alpha
Helix 23
AC5
B
54 61Right-handed alpha
Helix 24
AC6
B
70 84Right-handed alpha
Helix 25
AC7
B
108 113Right-handed alpha
Helix 26
AC8
B
121 129Right-handed alpha
Helix 27
AC9
B
132 138Right-handed 310
Helix 28
AD1
B
139 146Right-handed alpha
Helix 29
AD2
B
149 156Right-handed alpha
Helix 30
AD3
B
158 166Right-handed alpha
Helix 31
AD4
B
166 192Right-handed alpha
Helix 32
AD5
B
210 218Right-handed alpha
Helix 33
AD6
B
230 235Right-handed alpha
Helix 34
AD7
B
270 285Right-handed alpha
Helix 35
AD8
B
306 323Right-handed alpha
Helix 36
AD9
B
331 340Right-handed alpha
Helix 37
AE1
C
11 25Right-handed alpha
Helix 38
AE2
C
27 40Right-handed alpha
Helix 39
AE3
C
40 48Right-handed alpha
Helix 40
AE4
C
54 60Right-handed alpha
Helix 41
AE5
C
70 84Right-handed alpha
Helix 42
AE6
C
108 112Right-handed 310
Helix 43
AE7
C
121 129Right-handed alpha
Helix 44
AE8
C
130 135Right-handed alpha
Helix 45
AE9
C
136 138Right-handed 310
Helix 46
AF1
C
139 146Right-handed alpha
Helix 47
AF2
C
151 156Right-handed alpha
Helix 48
AF3
C
158 163Right-handed alpha
Helix 49
AF4
C
166 192Right-handed alpha
Helix 50
AF5
C
210 220Right-handed alpha
Helix 51
AF6
C
230 235Right-handed alpha
Helix 52
AF7
C
265 269Right-handed 310
Helix 53
AF8
C
270 285Right-handed alpha
Helix 54
AF9
C
306 323Right-handed alpha
Helix 55
AG1
C
331 342Right-handed alpha
Helix 56
AG2
D
8 24Right-handed alpha
Helix 57
AG3
D
27 40Right-handed alpha
Helix 58
AG4
D
40 48Right-handed alpha
Helix 59
AG5
D
54 60Right-handed alpha
Helix 60
AG6
D
70 84Right-handed alpha
Helix 61
AG7
D
107 112Right-handed 310
Helix 62
AG8
D
121 129Right-handed alpha
Helix 63
AG9
D
130 135Right-handed alpha
Helix 64
AH1
D
136 138Right-handed 310
Helix 65
AH2
D
139 146Right-handed alpha
Helix 66
AH3
D
151 156Right-handed alpha
Helix 67
AH4
D
166 192Right-handed alpha
Helix 68
AH5
D
210 220Right-handed alpha
Helix 69
AH6
D
270 285Right-handed alpha
Helix 70
AH7
D
306 323Right-handed alpha
Helix 71
AH8
D
331 340Right-handed alpha
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There are 12 sheets in PDB entry 4PGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
98 105anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
D
6 7anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
224 229parallel
Strand 3
A
201 205parallel
Strand 4
A
259 263parallel
Strand 5
A
291 296parallel
Strand 6
A
355 361anti-parallel
Strand 7
A
345 352anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
329 330parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 95first strand
Strand 2
B
98 105anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 247first strand
Strand 2
B
224 229parallel
Strand 3
B
201 205parallel
Strand 4
B
259 263parallel
Strand 5
B
291 296parallel
Strand 6
B
356 361anti-parallel
Strand 7
B
345 350anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 299first strand
Strand 2
B
329 330parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 94first strand
Strand 2
C
99 105anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
243 246first strand
Strand 2
C
224 228parallel
Strand 3
C
201 205parallel
Strand 4
C
259 263parallel
Strand 5
C
291 296parallel
Strand 6
C
356 361anti-parallel
Strand 7
C
345 350anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 299first strand
Strand 2
C
329 330parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 95first strand
Strand 2
D
98 105anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
243 246first strand
Strand 2
D
225 228parallel
Strand 3
D
202 205parallel
Strand 4
D
259 263parallel
Strand 5
D
291 296parallel
Strand 6
D
356 361anti-parallel
Strand 7
D
345 350anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
298 299first strand
Strand 2
D
329 330parallel
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