Analysis of interatomic Contacts of Structural Units in PDB entry:
4PGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PGL entry

There are 4 chains in PDB entry 4PGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 298
B
 MET 1ALA 290
C
 MET 1HIS 298
D
 MET 1ALA 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 4PGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
38 42Right-handed alpha
Helix 3
AA3
A
45 60Right-handed alpha
Helix 4
AA4
A
70 74Right-handed 310
Helix 5
AA5
A
79 101Right-handed alpha
Helix 6
AA6
A
124 146Right-handed alpha
Helix 7
AA7
A
164 176Right-handed alpha
Helix 8
AA8
A
186 193Right-handed alpha
Helix 9
AA9
A
195 203Right-handed alpha
Helix 10
AB1
A
226 237Right-handed alpha
Helix 11
AB2
A
253 259Right-handed alpha
Helix 12
AB3
A
270 290Right-handed alpha
Helix 13
AB4
A
292 297Right-handed alpha
Helix 14
AB5
B
18 29Right-handed alpha
Helix 15
AB6
B
38 42Right-handed alpha
Helix 16
AB7
B
45 60Right-handed alpha
Helix 17
AB8
B
70 74Right-handed 310
Helix 18
AB9
B
79 101Right-handed alpha
Helix 19
AC1
B
124 146Right-handed alpha
Helix 20
AC2
B
164 176Right-handed alpha
Helix 21
AC3
B
186 193Right-handed alpha
Helix 22
AC4
B
195 203Right-handed alpha
Helix 23
AC5
B
226 237Right-handed alpha
Helix 24
AC6
B
253 259Right-handed alpha
Helix 25
AC7
B
270 290Right-handed alpha
Helix 26
AC8
C
18 29Right-handed alpha
Helix 27
AC9
C
38 42Right-handed alpha
Helix 28
AD1
C
45 60Right-handed alpha
Helix 29
AD2
C
70 74Right-handed 310
Helix 30
AD3
C
79 101Right-handed alpha
Helix 31
AD4
C
124 146Right-handed alpha
Helix 32
AD5
C
164 176Right-handed alpha
Helix 33
AD6
C
186 193Right-handed alpha
Helix 34
AD7
C
195 203Right-handed alpha
Helix 35
AD8
C
226 237Right-handed alpha
Helix 36
AD9
C
253 259Right-handed alpha
Helix 37
AE1
C
270 290Right-handed alpha
Helix 38
AE2
C
292 298Right-handed 310
Helix 39
AE3
D
18 29Right-handed alpha
Helix 40
AE4
D
38 42Right-handed alpha
Helix 41
AE5
D
45 60Right-handed alpha
Helix 42
AE6
D
70 74Right-handed 310
Helix 43
AE7
D
79 101Right-handed alpha
Helix 44
AE8
D
124 146Right-handed alpha
Helix 45
AE9
D
164 176Right-handed alpha
Helix 46
AF1
D
186 193Right-handed alpha
Helix 47
AF2
D
195 203Right-handed alpha
Helix 48
AF3
D
226 237Right-handed alpha
Helix 49
AF4
D
253 259Right-handed alpha
Helix 50
AF5
D
270 290Right-handed alpha
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There are 4 sheets in PDB entry 4PGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
33 37parallel
Strand 3
A
62 69parallel
Strand 4
A
104 112parallel
Strand 5
A
148 152parallel
Strand 6
A
180 185parallel
Strand 7
A
207 212parallel
Strand 8
A
243 245parallel
Strand 9
A
4 7parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
33 37parallel
Strand 3
B
62 69parallel
Strand 4
B
104 112parallel
Strand 5
B
148 152parallel
Strand 6
B
180 185parallel
Strand 7
B
207 212parallel
Strand 8
B
243 245parallel
Strand 9
B
4 7parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
33 37parallel
Strand 3
C
62 69parallel
Strand 4
C
104 112parallel
Strand 5
C
148 152parallel
Strand 6
C
180 185parallel
Strand 7
C
207 212parallel
Strand 8
C
243 245parallel
Strand 9
C
4 7parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
33 37parallel
Strand 3
D
62 69parallel
Strand 4
D
104 112parallel
Strand 5
D
148 152parallel
Strand 6
D
180 185parallel
Strand 7
D
207 212parallel
Strand 8
D
243 245parallel
Strand 9
D
4 7parallel
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