Analysis of interatomic Contacts of Structural Units in PDB entry:
4PJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PJ3 entry

There is 1 chain in PDB entry 4PJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 19GLN 1381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 4PJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
60 70Right-handed alpha
Helix 4
AA4
A
71 76Right-handed alpha
Helix 5
AA5
A
77 81Right-handed 310
Helix 6
AA6
A
87 104Right-handed alpha
Helix 7
AA7
A
109 115Right-handed alpha
Helix 8
AA8
A
118 132Right-handed alpha
Helix 9
AA9
A
139 155Right-handed alpha
Helix 10
AB1
A
159 171Right-handed alpha
Helix 11
AB2
A
172 178Right-handed 310
Helix 12
AB3
A
179 190Right-handed alpha
Helix 13
AB4
A
192 206Right-handed alpha
Helix 14
AB5
A
208 220Right-handed alpha
Helix 15
AB6
A
220 235Right-handed alpha
Helix 16
AB7
A
243 262Right-handed alpha
Helix 17
AB8
A
263 277Right-handed alpha
Helix 18
AB9
A
278 285Right-handed alpha
Helix 19
AC1
A
286 291Right-handed alpha
Helix 20
AC2
A
295 310Right-handed alpha
Helix 21
AC3
A
322 345Right-handed alpha
Helix 22
AC4
A
348 354Right-handed alpha
Helix 23
AC5
A
355 360Right-handed alpha
Helix 24
AC6
A
361 370Right-handed alpha
Helix 25
AC7
A
373 384Right-handed alpha
Helix 26
AC8
A
399 412Right-handed alpha
Helix 27
AC9
A
416 423Right-handed alpha
Helix 28
AD1
A
429 434Right-handed alpha
Helix 29
AD2
A
461 492Right-handed alpha
Helix 30
AD3
A
546 554Right-handed alpha
Helix 31
AD4
A
582 588Right-handed alpha
Helix 32
AD5
A
630 645Right-handed alpha
Helix 33
AD6
A
648 652Right-handed 310
Helix 34
AD7
A
660 664Right-handed 310
Helix 35
AD8
A
665 679Right-handed alpha
Helix 36
AD9
A
684 692Right-handed alpha
Helix 37
AE1
A
701 705Right-handed 310
Helix 38
AE2
A
720 728Right-handed alpha
Helix 39
AE3
A
790 794Right-handed 310
Helix 40
AE4
A
803 815Right-handed alpha
Helix 41
AE5
A
828 844Right-handed alpha
Helix 42
AE6
A
855 867Right-handed alpha
Helix 43
AE7
A
872 874Right-handed 310
Helix 44
AE8
A
893 919Right-handed alpha
Helix 45
AE9
A
928 939Right-handed alpha
Helix 46
AF1
A
939 952Right-handed alpha
Helix 47
AF2
A
960 967Right-handed alpha
Helix 48
AF3
A
986 1012Right-handed alpha
Helix 49
AF4
A
1012 1017Right-handed alpha
Helix 50
AF5
A
1019 1030Right-handed alpha
Helix 51
AF6
A
1039 1053Right-handed alpha
Helix 52
AF7
A
1063 1067Right-handed 310
Helix 53
AF8
A
1068 1074Right-handed alpha
Helix 54
AF9
A
1075 1078Right-handed 310
Helix 55
AG1
A
1107 1114Right-handed alpha
Helix 56
AG2
A
1118 1127Right-handed alpha
Helix 57
AG3
A
1140 1149Right-handed alpha
Helix 58
AG4
A
1157 1163Right-handed alpha
Helix 59
AG5
A
1164 1167Right-handed 310
Helix 60
AG6
A
1200 1218Right-handed alpha
Helix 61
AG7
A
1220 1222Right-handed 310
Helix 62
AG8
A
1230 1245Right-handed alpha
Helix 63
AG9
A
1261 1264Right-handed 310
Helix 64
AH1
A
1281 1285Right-handed 310
Helix 65
AH2
A
1286 1294Right-handed alpha
Helix 66
AH3
A
1306 1312Right-handed alpha
Helix 67
AH4
A
1313 1315Right-handed 310
Helix 68
AH5
A
1316 1324Right-handed alpha
Helix 69
AH6
A
1357 1376Right-handed alpha
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There are 7 sheets in PDB entry 4PJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 496first strand
Strand 2
A
502 504anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 522first strand
Strand 2
A
535 542anti-parallel
Strand 3
A
622 629anti-parallel
Strand 4
A
589 600anti-parallel
Strand 5
A
561 567anti-parallel
Strand 6
A
655 657anti-parallel
Strand 7
A
511 522anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 715first strand
Strand 2
A
747 750anti-parallel
Strand 3
A
776 781anti-parallel
Strand 4
A
732 735parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
876 878first strand
Strand 2
A
1034 1038parallel
Strand 3
A
849 853parallel
Strand 4
A
1058 1061parallel
Strand 5
A
1090 1095parallel
Strand 6
A
817 822parallel
Strand 7
A
1131 1132parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1135 1136first strand
Strand 2
A
1155 1156parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1181first strand
Strand 2
A
1297 1305parallel
Strand 3
A
1268 1274parallel
Strand 4
A
1224 1228parallel
Strand 5
A
1257 1259parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1330 1332first strand
Strand 2
A
1353 1355anti-parallel
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