Analysis of interatomic Contacts of Structural Units in PDB entry:
4PJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PJK entry

There is 1 chain in PDB entry 4PJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 747
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4PJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 16Right-handed alpha
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
90 94Right-handed 310
Helix 5
AA5
A
98 112Right-handed alpha
Helix 6
AA6
A
136 144Right-handed alpha
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
154 170Right-handed alpha
Helix 9
AA9
A
184 201Right-handed alpha
Helix 10
AB1
A
210 226Right-handed alpha
Helix 11
AB2
A
264 269Right-handed 310
Helix 12
AB3
A
278 288Right-handed alpha
Helix 13
AB4
A
289 296Right-handed alpha
Helix 14
AB5
A
300 304Right-handed 310
Helix 15
AB6
A
319 335Right-handed alpha
Helix 16
AB7
A
337 356Right-handed alpha
Helix 17
AB8
A
372 383Right-handed alpha
Helix 18
AB9
A
385 395Right-handed alpha
Helix 19
AC1
A
410 442Right-handed alpha
Helix 20
AC2
A
465 487Right-handed alpha
Helix 21
AC3
A
487 497Right-handed alpha
Helix 22
AC4
A
510 519Right-handed alpha
Helix 23
AC5
A
524 534Right-handed alpha
Helix 24
AC6
A
539 552Right-handed alpha
Helix 25
AC7
A
583 590Right-handed alpha
Helix 26
AC8
A
593 602Right-handed alpha
Helix 27
AC9
A
605 614Right-handed alpha
Helix 28
AD1
A
614 619Right-handed alpha
Helix 29
AD2
A
629 647Right-handed alpha
Helix 30
AD3
A
668 679Right-handed alpha
Helix 31
AD4
A
680 691Right-handed alpha
Helix 32
AD5
A
697 701Right-handed 310
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There are 8 sheets in PDB entry 4PJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
34 37anti-parallel
Strand 5
A
78 79anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
649 656parallel
Strand 4
A
173 178parallel
Strand 5
A
448 454parallel
Strand 6
A
240 247anti-parallel
Strand 7
A
253 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
236 237anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
367 368anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
403 406anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
567 572anti-parallel
Strand 3
A
575 580anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
626 627anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 696first strand
Strand 2
A
744 746anti-parallel
Strand 3
A
737 739anti-parallel
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