Analysis of interatomic Contacts of Structural Units in PDB entry:
4PJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PJN entry

There is 1 chain in PDB entry 4PJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ILE 789
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4PJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 48Right-handed 310
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
69 83Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
126 142Right-handed alpha
Helix 6
AA6
A
156 173Right-handed alpha
Helix 7
AA7
A
176 185Right-handed alpha
Helix 8
AA8
A
185 193Right-handed alpha
Helix 9
AA9
A
232 236Right-handed 310
Helix 10
AB1
A
245 255Right-handed alpha
Helix 11
AB2
A
256 264Right-handed alpha
Helix 12
AB3
A
267 270Right-handed 310
Helix 13
AB4
A
271 276Right-handed alpha
Helix 14
AB5
A
284 289Right-handed alpha
Helix 15
AB6
A
290 291Right-handed 310
Helix 16
AB7
A
292 296Right-handed 310
Helix 17
AB8
A
297 304Right-handed alpha
Helix 18
AB9
A
312 328Right-handed alpha
Helix 19
AC1
A
330 349Right-handed alpha
Helix 20
AC2
A
368 380Right-handed alpha
Helix 21
AC3
A
382 391Right-handed alpha
Helix 22
AC4
A
412 443Right-handed alpha
Helix 23
AC5
A
467 489Right-handed alpha
Helix 24
AC6
A
489 499Right-handed alpha
Helix 25
AC7
A
511 520Right-handed alpha
Helix 26
AC8
A
524 535Right-handed alpha
Helix 27
AC9
A
539 551Right-handed alpha
Helix 28
AD1
A
559 563Right-handed 310
Helix 29
AD2
A
565 569Right-handed 310
Helix 30
AD3
A
572 574Right-handed 310
Helix 31
AD4
A
592 597Right-handed alpha
Helix 32
AD5
A
602 611Right-handed alpha
Helix 33
AD6
A
614 621Right-handed alpha
Helix 34
AD7
A
642 660Right-handed alpha
Helix 35
AD8
A
681 692Right-handed alpha
Helix 36
AD9
A
693 703Right-handed alpha
Helix 37
AE1
A
711 719Right-handed alpha
Helix 38
AE2
A
720 722Right-handed 310
Helix 39
AE3
A
723 728Right-handed alpha
Helix 40
AE4
A
730 742Right-handed alpha
Helix 41
AE5
A
762 771Right-handed alpha
Helix 42
AE6
A
773 789Right-handed alpha
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There are 7 sheets in PDB entry 4PJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
15 25anti-parallel
Strand 4
A
7 11anti-parallel
Strand 5
A
49 50anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
662 669parallel
Strand 4
A
145 150parallel
Strand 5
A
450 456parallel
Strand 6
A
207 214anti-parallel
Strand 7
A
220 228anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
203 204anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
361 364anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
407 410anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
576 581anti-parallel
Strand 3
A
584 589anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 710first strand
Strand 2
A
755 758anti-parallel
Strand 3
A
749 751anti-parallel
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