Analysis of interatomic Contacts of Structural Units in PDB entry:
4PJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4PJO entry

There are 44 chains in PDB entry 4PJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 84
B	SER 6	LYS 88
C	GLY -3	ASP 82
D	GLU 10	ALA 116
E	MET 14	VAL 90
F	LEU 3	VAL 75
G	LYS 3	VAL 76
K	THR 2	ARG 59
L	PRO 2	THR 54
1	G 2	G 138
X	A 1	C 10
a	SER 2	LYS 84
b	SER 6	ASP 89
c	GLY -3	VAL 83
d	PRO 13	LEU 114
e	MET 14	VAL 90
f	SER 2	VAL 75
g	ALA 4	VAL 76
k	GLN 3	ARG 59
l	PRO 2	THR 54
2	G 2	G 138
x	A 1	C 10
O	SER 2	LEU 83
P	SER 6	LYS 88
Q	SER -2	ASP 82
R	GLU 10	ALA 116
S	MET 14	VAL 90
T	SER 2	VAL 75
U	ALA 4	VAL 76
N	PRO 6	THR 58
M	PRO 2	THR 54
3	G 2	U 137
Y	A 1	C 10
o	ILE 3	LEU 83
p	SER 6	GLY 91
q	SER -4	ASP 82
r	GLU 10	LEU 114
s	MET 14	VAL 90
t	SER 2	VAL 75
u	ALA 4	VAL 76
n	THR 2	ARG 59
m	PRO 2	ASP 51
4	G 2	G 139
y	A 1	C 10

There are 62 helices in PDB entry 4PJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	13	Right-handed alpha
Helix 2	AA2	A	74	80	Right-handed 310
Helix 3	AA3	B	7	11	Right-handed alpha
Helix 4	AA4	C	3	9	Right-handed alpha
Helix 5	AA5	C	75	80	Right-handed alpha
Helix 6	AA6	D	18	27	Right-handed alpha
Helix 7	AA7	D	29	38	Right-handed alpha
Helix 8	AA8	E	16	28	Right-handed alpha
Helix 9	AA9	F	6	15	Right-handed alpha
Helix 10	AB1	K	6	11	Right-handed alpha
Helix 11	AB2	K	28	32	Right-handed 310
Helix 12	AB3	K	41	48	Right-handed 310
Helix 13	AB4	K	50	54	Right-handed 310
Helix 14	AB5	L	17	26	Right-handed alpha
Helix 15	AB6	L	27	54	Right-handed alpha
Helix 16	AB7	a	4	13	Right-handed alpha
Helix 17	AB8	a	74	80	Right-handed 310
Helix 18	AB9	b	7	11	Right-handed alpha
Helix 19	AC1	c	3	9	Right-handed alpha
Helix 20	AC2	c	75	82	Right-handed alpha
Helix 21	AC3	d	14	27	Right-handed alpha
Helix 22	AC4	d	29	39	Right-handed alpha
Helix 23	AC5	e	16	27	Right-handed alpha
Helix 24	AC6	f	6	15	Right-handed alpha
Helix 25	AC7	k	6	11	Right-handed alpha
Helix 26	AC8	k	28	32	Right-handed 310
Helix 27	AC9	k	41	48	Right-handed 310
Helix 28	AD1	l	17	26	Right-handed alpha
Helix 29	AD2	l	27	42	Right-handed alpha
Helix 30	AD3	l	42	50	Right-handed alpha
Helix 31	AD4	l	51	54	Right-handed 310
Helix 32	AD5	O	4	13	Right-handed alpha
Helix 33	AD6	O	74	80	Right-handed 310
Helix 34	AD7	P	7	11	Right-handed alpha
Helix 35	AD8	Q	3	9	Right-handed alpha
Helix 36	AD9	Q	75	80	Right-handed alpha
Helix 37	AE1	R	18	27	Right-handed alpha
Helix 38	AE2	R	29	39	Right-handed alpha
Helix 39	AE3	S	16	28	Right-handed alpha
Helix 40	AE4	T	6	15	Right-handed alpha
Helix 41	AE5	N	7	11	Right-handed alpha
Helix 42	AE6	N	28	32	Right-handed 310
Helix 43	AE7	N	41	48	Right-handed 310
Helix 44	AE8	N	50	54	Right-handed 310
Helix 45	AE9	M	17	26	Right-handed alpha
Helix 46	AF1	M	27	54	Right-handed alpha
Helix 47	AF2	o	4	13	Right-handed alpha
Helix 48	AF3	o	74	80	Right-handed 310
Helix 49	AF4	p	7	11	Right-handed alpha
Helix 50	AF5	q	3	9	Right-handed alpha
Helix 51	AF6	q	75	80	Right-handed alpha
Helix 52	AF7	r	18	27	Right-handed alpha
Helix 53	AF8	r	29	39	Right-handed alpha
Helix 54	AF9	s	16	28	Right-handed alpha
Helix 55	AG1	t	6	15	Right-handed alpha
Helix 56	AG2	u	63	65	Right-handed 310
Helix 57	AG3	n	6	11	Right-handed alpha
Helix 58	AG4	n	28	32	Right-handed 310
Helix 59	AG5	n	41	45	Right-handed 310
Helix 60	AG6	n	49	53	Right-handed 310
Helix 61	AG7	m	17	26	Right-handed alpha
Helix 62	AG8	m	27	51	Right-handed alpha

There are 13 sheets in PDB entry 4PJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 37 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	57	first strand
Strand 2	G	40	46	anti-parallel
Strand 3	G	60	62	anti-parallel
Strand 4	E	84	89	anti-parallel
Strand 5	E	30	35	anti-parallel
Strand 6	E	41	50	anti-parallel
Strand 7	E	56	65	anti-parallel
Strand 8	E	71	79	anti-parallel
Strand 9	F	69	74	anti-parallel
Strand 10	F	18	23	anti-parallel
Strand 11	F	28	36	anti-parallel
Strand 12	F	42	51	anti-parallel
Strand 13	F	54	64	anti-parallel
Strand 14	D	106	111	anti-parallel
Strand 15	D	41	46	anti-parallel
Strand 16	D	51	59	anti-parallel
Strand 17	D	65	76	anti-parallel
Strand 18	D	90	101	anti-parallel
Strand 19	C	65	69	anti-parallel
Strand 20	C	14	19	anti-parallel
Strand 21	C	24	32	anti-parallel
Strand 22	C	38	46	anti-parallel
Strand 23	C	53	60	anti-parallel
Strand 24	B	77	84	anti-parallel
Strand 25	B	16	21	anti-parallel
Strand 26	B	26	34	anti-parallel
Strand 27	B	40	48	anti-parallel
Strand 28	B	65	72	anti-parallel
Strand 29	A	68	73	anti-parallel
Strand 30	A	17	22	anti-parallel
Strand 31	A	27	35	anti-parallel
Strand 32	A	41	49	anti-parallel
Strand 33	A	55	63	anti-parallel
Strand 34	G	67	72	anti-parallel
Strand 35	G	16	21	anti-parallel
Strand 36	G	26	34	anti-parallel
Strand 37	G	40	46	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	61	62	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	11	13	anti-parallel

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There are 38 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	53	55	first strand
Strand 2	c	43	46	anti-parallel
Strand 3	c	24	32	anti-parallel
Strand 4	c	38	40	anti-parallel
Strand 5	c	58	60	anti-parallel
Strand 6	b	77	84	anti-parallel
Strand 7	b	16	21	anti-parallel
Strand 8	b	26	34	anti-parallel
Strand 9	b	40	48	anti-parallel
Strand 10	b	65	72	anti-parallel
Strand 11	a	68	73	anti-parallel
Strand 12	a	17	22	anti-parallel
Strand 13	a	27	35	anti-parallel
Strand 14	a	41	49	anti-parallel
Strand 15	a	55	63	anti-parallel
Strand 16	g	67	72	anti-parallel
Strand 17	g	16	21	anti-parallel
Strand 18	g	26	34	anti-parallel
Strand 19	g	40	46	anti-parallel
Strand 20	g	56	62	anti-parallel
Strand 21	e	84	89	anti-parallel
Strand 22	e	30	35	anti-parallel
Strand 23	e	41	50	anti-parallel
Strand 24	e	56	65	anti-parallel
Strand 25	e	71	79	anti-parallel
Strand 26	f	69	74	anti-parallel
Strand 27	f	18	23	anti-parallel
Strand 28	f	28	36	anti-parallel
Strand 29	f	42	51	anti-parallel
Strand 30	f	54	64	anti-parallel
Strand 31	d	106	111	anti-parallel
Strand 32	d	41	46	anti-parallel
Strand 33	d	51	59	anti-parallel
Strand 34	d	65	76	anti-parallel
Strand 35	d	90	101	anti-parallel
Strand 36	c	65	69	anti-parallel
Strand 37	c	14	19	anti-parallel
Strand 38	c	24	32	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	50	51	first strand
Strand 2	b	61	62	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	4	6	first strand
Strand 2	l	11	13	anti-parallel

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There are 33 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	71	73	first strand
Strand 2	S	56	65	anti-parallel
Strand 3	S	41	50	anti-parallel
Strand 4	S	30	35	anti-parallel
Strand 5	S	84	89	anti-parallel
Strand 6	U	56	62	anti-parallel
Strand 7	U	40	46	anti-parallel
Strand 8	U	26	34	anti-parallel
Strand 9	U	16	21	anti-parallel
Strand 10	U	67	72	anti-parallel
Strand 11	O	55	63	anti-parallel
Strand 12	O	41	49	anti-parallel
Strand 13	O	27	35	anti-parallel
Strand 14	O	17	22	anti-parallel
Strand 15	O	68	73	anti-parallel
Strand 16	P	65	72	anti-parallel
Strand 17	P	40	48	anti-parallel
Strand 18	P	26	34	anti-parallel
Strand 19	P	16	21	anti-parallel
Strand 20	P	77	84	anti-parallel
Strand 21	Q	53	60	anti-parallel
Strand 22	Q	38	46	anti-parallel
Strand 23	Q	24	32	anti-parallel
Strand 24	Q	14	19	anti-parallel
Strand 25	Q	65	69	anti-parallel
Strand 26	R	90	101	anti-parallel
Strand 27	R	65	76	anti-parallel
Strand 28	R	51	59	anti-parallel
Strand 29	R	41	46	anti-parallel
Strand 30	R	106	111	anti-parallel
Strand 31	T	62	64	anti-parallel
Strand 32	T	42	51	anti-parallel
Strand 33	T	54	58	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	71	73	first strand
Strand 2	S	56	65	anti-parallel
Strand 3	S	77	79	anti-parallel
Strand 4	T	69	74	anti-parallel
Strand 5	T	18	23	anti-parallel
Strand 6	T	28	36	anti-parallel
Strand 7	T	42	51	anti-parallel
Strand 8	T	54	58	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	50	51	first strand
Strand 2	P	61	62	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	6	first strand
Strand 2	M	11	13	anti-parallel

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There are 37 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	54	58	first strand
Strand 2	t	42	51	anti-parallel
Strand 3	t	62	64	anti-parallel
Strand 4	r	106	111	anti-parallel
Strand 5	r	41	46	anti-parallel
Strand 6	r	51	59	anti-parallel
Strand 7	r	65	76	anti-parallel
Strand 8	r	90	101	anti-parallel
Strand 9	q	65	69	anti-parallel
Strand 10	q	14	19	anti-parallel
Strand 11	q	24	32	anti-parallel
Strand 12	q	38	46	anti-parallel
Strand 13	q	53	60	anti-parallel
Strand 14	p	77	84	anti-parallel
Strand 15	p	16	21	anti-parallel
Strand 16	p	26	34	anti-parallel
Strand 17	p	40	48	anti-parallel
Strand 18	p	65	72	anti-parallel
Strand 19	o	68	73	anti-parallel
Strand 20	o	17	22	anti-parallel
Strand 21	o	27	35	anti-parallel
Strand 22	o	41	49	anti-parallel
Strand 23	o	55	63	anti-parallel
Strand 24	u	67	72	anti-parallel
Strand 25	u	16	21	anti-parallel
Strand 26	u	26	34	anti-parallel
Strand 27	u	40	46	anti-parallel
Strand 28	u	56	62	anti-parallel
Strand 29	s	84	89	anti-parallel
Strand 30	s	30	35	anti-parallel
Strand 31	s	41	50	anti-parallel
Strand 32	s	56	65	anti-parallel
Strand 33	s	71	79	anti-parallel
Strand 34	t	69	74	anti-parallel
Strand 35	t	18	23	anti-parallel
Strand 36	t	28	36	anti-parallel
Strand 37	t	42	51	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	50	51	first strand
Strand 2	p	61	62	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	4	6	first strand
Strand 2	m	11	13	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4PJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
4PJO