Analysis of interatomic Contacts of Structural Units in PDB entry:
4PJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4PJT entry

There are 4 chains in PDB entry 4PJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 662	LYS 1010
B	LYS 662	LYS 1010
C	LYS 662	LYS 1010
D	SER 663	ASN 987

There are 63 helices in PDB entry 4PJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	666	677	Right-handed alpha
Helix 2	AA2	A	678	689	Right-handed alpha
Helix 3	AA3	A	697	701	Right-handed 310
Helix 4	AA4	A	702	722	Right-handed alpha
Helix 5	AA5	A	727	740	Right-handed alpha
Helix 6	AA6	A	754	780	Right-handed alpha
Helix 7	AA7	A	788	797	Right-handed alpha
Helix 8	AA8	A	808	821	Right-handed alpha
Helix 9	AA9	A	843	849	Right-handed alpha
Helix 10	AB1	A	850	852	Right-handed 310
Helix 11	AB2	A	865	867	Right-handed 310
Helix 12	AB3	A	868	876	Right-handed alpha
Helix 13	AB4	A	900	906	Right-handed alpha
Helix 14	AB5	A	907	909	Right-handed 310
Helix 15	AB6	A	958	961	Right-handed 310
Helix 16	AB7	A	993	995	Right-handed 310
Helix 17	AB8	B	666	677	Right-handed alpha
Helix 18	AB9	B	678	689	Right-handed alpha
Helix 19	AC1	B	697	701	Right-handed 310
Helix 20	AC2	B	702	721	Right-handed alpha
Helix 21	AC3	B	727	740	Right-handed alpha
Helix 22	AC4	B	754	780	Right-handed alpha
Helix 23	AC5	B	788	797	Right-handed alpha
Helix 24	AC6	B	808	821	Right-handed alpha
Helix 25	AC7	B	843	853	Right-handed alpha
Helix 26	AC8	B	865	867	Right-handed 310
Helix 27	AC9	B	868	876	Right-handed alpha
Helix 28	AD1	B	900	906	Right-handed alpha
Helix 29	AD2	B	907	909	Right-handed 310
Helix 30	AD3	B	958	961	Right-handed 310
Helix 31	AD4	B	993	995	Right-handed 310
Helix 32	AD5	C	666	677	Right-handed alpha
Helix 33	AD6	C	678	689	Right-handed alpha
Helix 34	AD7	C	697	701	Right-handed 310
Helix 35	AD8	C	702	723	Right-handed alpha
Helix 36	AD9	C	725	740	Right-handed alpha
Helix 37	AE1	C	754	780	Right-handed alpha
Helix 38	AE2	C	788	797	Right-handed alpha
Helix 39	AE3	C	808	821	Right-handed alpha
Helix 40	AE4	C	843	849	Right-handed alpha
Helix 41	AE5	C	850	854	Right-handed 310
Helix 42	AE6	C	865	867	Right-handed 310
Helix 43	AE7	C	868	876	Right-handed alpha
Helix 44	AE8	C	900	906	Right-handed alpha
Helix 45	AE9	C	907	909	Right-handed 310
Helix 46	AF1	C	958	961	Right-handed 310
Helix 47	AF2	C	993	995	Right-handed 310
Helix 48	AF3	D	666	677	Right-handed alpha
Helix 49	AF4	D	678	689	Right-handed alpha
Helix 50	AF5	D	697	701	Right-handed 310
Helix 51	AF6	D	702	721	Right-handed alpha
Helix 52	AF7	D	731	740	Right-handed alpha
Helix 53	AF8	D	754	779	Right-handed alpha
Helix 54	AF9	D	789	797	Right-handed alpha
Helix 55	AG1	D	808	821	Right-handed alpha
Helix 56	AG2	D	843	849	Right-handed alpha
Helix 57	AG3	D	850	852	Right-handed 310
Helix 58	AG4	D	865	867	Right-handed 310
Helix 59	AG5	D	868	876	Right-handed alpha
Helix 60	AG6	D	900	906	Right-handed alpha
Helix 61	AG7	D	907	909	Right-handed 310
Helix 62	AG8	D	958	961	Right-handed 310
Helix 63	AG9	D	993	995	Right-handed 310

There are 16 sheets in PDB entry 4PJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	803	first strand
Strand 2	A	829	841	anti-parallel
Strand 3	A	997	1009	anti-parallel
Strand 4	A	916	925	anti-parallel
Strand 5	A	857	863	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	897	first strand
Strand 2	A	988	991	anti-parallel
Strand 3	A	947	950	anti-parallel
Strand 4	A	929	932	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	974	976	first strand
Strand 2	A	952	956	anti-parallel
Strand 3	A	984	986	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	967	969	first strand
Strand 2	A	962	964	anti-parallel
Strand 3	C	936	937	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	803	first strand
Strand 2	B	829	841	anti-parallel
Strand 3	B	997	1009	anti-parallel
Strand 4	B	916	925	anti-parallel
Strand 5	B	857	863	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	897	first strand
Strand 2	B	988	991	anti-parallel
Strand 3	B	947	950	anti-parallel
Strand 4	B	929	932	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	976	first strand
Strand 2	B	952	956	anti-parallel
Strand 3	B	984	986	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	964	first strand
Strand 2	B	967	969	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	799	803	first strand
Strand 2	C	829	841	anti-parallel
Strand 3	C	997	1009	anti-parallel
Strand 4	C	916	925	anti-parallel
Strand 5	C	857	863	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	895	897	first strand
Strand 2	C	988	991	anti-parallel
Strand 3	C	947	950	anti-parallel
Strand 4	C	929	932	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	974	976	first strand
Strand 2	C	952	956	anti-parallel
Strand 3	C	984	986	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	962	964	first strand
Strand 2	C	967	969	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	803	first strand
Strand 2	D	830	841	anti-parallel
Strand 3	D	997	1008	anti-parallel
Strand 4	D	916	925	anti-parallel
Strand 5	D	857	863	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	895	897	first strand
Strand 2	D	988	991	anti-parallel
Strand 3	D	947	950	anti-parallel
Strand 4	D	929	932	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	974	976	first strand
Strand 2	D	952	956	anti-parallel
Strand 3	D	984	986	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	962	964	first strand
Strand 2	D	967	969	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4PJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
4PJT