Analysis of interatomic Contacts of Structural Units in PDB entry:
4PLJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4PLJ entry

There are 6 chains in PDB entry 4PLJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 459	ALA 606
B	SER 459	SER 605
L	ASP 1	ASN 212
H	GLN 1	ARG 223
C	ASP 1	ARG 211
D	GLN 1	ARG 223

There are 16 helices in PDB entry 4PLJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	515	518	Right-handed 310
Helix 2	AA2	B	515	518	Right-handed 310
Helix 3	AA3	L	79	83	Right-handed 310
Helix 4	AA4	L	121	126	Right-handed alpha
Helix 5	AA5	L	183	188	Right-handed alpha
Helix 6	AA6	H	26	30	Right-handed 310
Helix 7	AA7	H	60	63	Right-handed 310
Helix 8	AA8	H	85	89	Right-handed 310
Helix 9	AA9	H	166	168	Right-handed 310
Helix 10	AB1	H	210	213	Right-handed 310
Helix 11	AB2	C	79	83	Right-handed 310
Helix 12	AB3	C	121	127	Right-handed alpha
Helix 13	AB4	C	183	187	Right-handed alpha
Helix 14	AB5	D	26	30	Right-handed 310
Helix 15	AB6	D	60	63	Right-handed 310
Helix 16	AB7	D	85	89	Right-handed 310

There are 28 sheets in PDB entry 4PLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	520	521	parallel
Strand 3	A	524	525	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	498	502	anti-parallel
Strand 3	A	470	481	anti-parallel
Strand 4	A	492	495	anti-parallel
Strand 5	A	579	582	anti-parallel
Strand 6	A	568	572	anti-parallel
Strand 7	A	534	549	anti-parallel
Strand 8	A	528	531	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	498	502	anti-parallel
Strand 3	A	470	481	anti-parallel
Strand 4	A	593	601	anti-parallel
Strand 5	A	534	549	anti-parallel
Strand 6	A	528	531	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	520	521	parallel
Strand 3	B	524	525	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	497	502	anti-parallel
Strand 3	B	470	481	anti-parallel
Strand 4	B	492	495	anti-parallel
Strand 5	B	579	582	anti-parallel
Strand 6	B	568	572	anti-parallel
Strand 7	B	534	549	anti-parallel
Strand 8	B	527	531	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	497	502	anti-parallel
Strand 3	B	470	481	anti-parallel
Strand 4	B	593	601	anti-parallel
Strand 5	B	534	549	anti-parallel
Strand 6	B	527	531	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	16	22	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	66	71	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	115	119	parallel
Strand 3	H	90	97	anti-parallel
Strand 4	H	32	37	anti-parallel
Strand 5	H	43	49	anti-parallel
Strand 6	H	56	58	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	115	119	parallel
Strand 3	H	90	97	anti-parallel
Strand 4	H	108	111	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	184	194	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	184	194	anti-parallel
Strand 4	H	179	181	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	204	209	anti-parallel
Strand 3	H	214	219	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	102	107	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	48	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	102	107	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	160	163	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	192	197	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	76	81	anti-parallel
Strand 4	D	66	71	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	115	119	parallel
Strand 3	D	90	97	anti-parallel
Strand 4	D	32	37	anti-parallel
Strand 5	D	43	49	anti-parallel
Strand 6	D	56	58	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	115	119	parallel
Strand 3	D	90	97	anti-parallel
Strand 4	D	108	111	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	185	194	anti-parallel
Strand 4	D	173	175	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	185	194	anti-parallel
Strand 4	D	179	180	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	204	209	anti-parallel
Strand 3	D	214	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4PLJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4PLJ