Analysis of interatomic Contacts of Structural Units in PDB entry:
4PMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PMV entry

There are 2 chains in PDB entry 4PMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 22THR 378
B
 THR 23THR 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4PMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 29Right-handed alpha
Helix 2
AA2
A
40 45Right-handed alpha
Helix 3
AA3
A
48 59Right-handed alpha
Helix 4
AA4
A
69 74Right-handed alpha
Helix 5
AA5
A
82 94Right-handed alpha
Helix 6
AA6
A
111 116Right-handed 310
Helix 7
AA7
A
124 140Right-handed alpha
Helix 8
AA8
A
166 173Right-handed alpha
Helix 9
AA9
A
174 190Right-handed alpha
Helix 10
AB1
A
204 221Right-handed alpha
Helix 11
AB2
A
240 253Right-handed alpha
Helix 12
AB3
A
279 287Right-handed 310
Helix 13
AB4
A
288 296Right-handed alpha
Helix 14
AB5
A
303 324Right-handed alpha
Helix 15
AB6
A
337 341Right-handed 310
Helix 16
AB7
A
365 374Right-handed alpha
Helix 17
AB8
A
375 377Right-handed 310
Helix 18
AB9
B
24 29Right-handed alpha
Helix 19
AC1
B
40 45Right-handed alpha
Helix 20
AC2
B
48 59Right-handed alpha
Helix 21
AC3
B
69 74Right-handed alpha
Helix 22
AC4
B
82 95Right-handed alpha
Helix 23
AC5
B
111 116Right-handed 310
Helix 24
AC6
B
124 140Right-handed alpha
Helix 25
AC7
B
141 144Right-handed 310
Helix 26
AC8
B
166 173Right-handed alpha
Helix 27
AC9
B
174 190Right-handed alpha
Helix 28
AD1
B
204 221Right-handed alpha
Helix 29
AD2
B
240 253Right-handed alpha
Helix 30
AD3
B
283 287Right-handed 310
Helix 31
AD4
B
288 296Right-handed alpha
Helix 32
AD5
B
303 324Right-handed alpha
Helix 33
AD6
B
337 341Right-handed 310
Helix 34
AD7
B
365 374Right-handed alpha
Helix 35
AD8
B
375 377Right-handed 310
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There are 2 sheets in PDB entry 4PMV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
257 266parallel
Strand 3
A
328 333parallel
Strand 4
A
34 39parallel
Strand 5
A
61 64parallel
Strand 6
A
98 106parallel
Strand 7
A
149 154parallel
Strand 8
A
194 199parallel
Strand 9
A
227 230parallel
Strand 10
A
257 266parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
257 266parallel
Strand 3
B
328 333parallel
Strand 4
B
34 39parallel
Strand 5
B
61 64parallel
Strand 6
B
98 101parallel
Strand 7
B
149 154parallel
Strand 8
B
194 199parallel
Strand 9
B
227 230parallel
Strand 10
B
257 266parallel
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