Analysis of interatomic Contacts of Structural Units in PDB entry:
4PMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4PMW entry

There is 1 chain in PDB entry 4PMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 49	ARG 792

There are 43 helices in PDB entry 4PMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	66	Right-handed alpha
Helix 2	AA2	A	281	283	Right-handed 310
Helix 3	AA3	A	284	290	Right-handed alpha
Helix 4	AA4	A	291	295	Right-handed 310
Helix 5	AA5	A	326	338	Right-handed alpha
Helix 6	AA6	A	346	351	Right-handed alpha
Helix 7	AA7	A	362	369	Right-handed alpha
Helix 8	AA8	A	410	415	Right-handed alpha
Helix 9	AA9	A	419	429	Right-handed alpha
Helix 10	AB1	A	443	448	Right-handed alpha
Helix 11	AB2	A	492	501	Right-handed alpha
Helix 12	AB3	A	519	544	Right-handed alpha
Helix 13	AB4	A	574	599	Right-handed alpha
Helix 14	AB5	A	612	625	Right-handed alpha
Helix 15	AB6	A	626	628	Right-handed 310
Helix 16	AB7	A	634	642	Right-handed alpha
Helix 17	AB8	A	649	663	Right-handed alpha
Helix 18	AB9	A	676	678	Right-handed 310
Helix 19	AC1	A	680	685	Right-handed 310
Helix 20	AC2	A	703	717	Right-handed alpha
Helix 21	AC3	A	726	763	Right-handed alpha
Helix 22	AC4	B	55	65	Right-handed alpha
Helix 23	AC5	B	281	283	Right-handed 310
Helix 24	AC6	B	284	290	Right-handed alpha
Helix 25	AC7	B	291	295	Right-handed 310
Helix 26	AC8	B	326	338	Right-handed alpha
Helix 27	AC9	B	346	351	Right-handed alpha
Helix 28	AD1	B	362	369	Right-handed alpha
Helix 29	AD2	B	410	415	Right-handed alpha
Helix 30	AD3	B	419	429	Right-handed alpha
Helix 31	AD4	B	443	448	Right-handed alpha
Helix 32	AD5	B	492	501	Right-handed alpha
Helix 33	AD6	B	519	544	Right-handed alpha
Helix 34	AD7	B	574	599	Right-handed alpha
Helix 35	AD8	B	612	625	Right-handed alpha
Helix 36	AD9	B	626	628	Right-handed 310
Helix 37	AE1	B	634	642	Right-handed alpha
Helix 38	AE2	B	649	663	Right-handed alpha
Helix 39	AE3	B	676	678	Right-handed 310
Helix 40	AE4	B	680	685	Right-handed 310
Helix 41	AE5	B	703	717	Right-handed alpha
Helix 42	AE6	B	726	763	Right-handed alpha
Helix 43	AE7	B	796	798	Right-handed 310

There are 20 sheets in PDB entry 4PMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	72	first strand
Strand 2	A	110	115	anti-parallel
Strand 3	A	231	238	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	82	85	anti-parallel
Strand 3	A	94	97	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	250	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	276	279	anti-parallel
Strand 4	A	313	323	parallel
Strand 5	A	297	305	anti-parallel
Strand 6	A	244	250	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	474	485	parallel
Strand 3	A	458	468	anti-parallel
Strand 4	A	402	409	anti-parallel
Strand 5	A	390	396	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	381	first strand
Strand 2	A	489	491	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	433	first strand
Strand 2	A	438	439	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	558	first strand
Strand 2	A	565	570	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	607	first strand
Strand 2	A	671	674	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	794	first strand
Strand 2	A	779	784	anti-parallel
Strand 3	A	766	775	anti-parallel
Strand 4	A	837	844	anti-parallel
Strand 5	A	851	854	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	800	806	first strand
Strand 2	A	813	818	anti-parallel
Strand 3	A	829	833	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	110	115	anti-parallel
Strand 3	B	231	238	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	82	85	anti-parallel
Strand 3	B	94	97	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	250	first strand
Strand 2	B	263	268	anti-parallel
Strand 3	B	276	279	anti-parallel
Strand 4	B	313	323	parallel
Strand 5	B	297	305	anti-parallel
Strand 6	B	244	250	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	474	485	parallel
Strand 3	B	458	468	anti-parallel
Strand 4	B	402	409	anti-parallel
Strand 5	B	390	396	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	381	first strand
Strand 2	B	489	491	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	433	first strand
Strand 2	B	438	439	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	558	first strand
Strand 2	B	565	570	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	604	607	first strand
Strand 2	B	671	674	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	794	first strand
Strand 2	B	779	784	anti-parallel
Strand 3	B	766	775	anti-parallel
Strand 4	B	837	844	anti-parallel
Strand 5	B	851	855	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	800	806	first strand
Strand 2	B	813	818	anti-parallel
Strand 3	B	829	833	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4PMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
4PMW