Analysis of interatomic Contacts of Structural Units in PDB entry:
4PMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PMX entry

There is 1 chain in PDB entry 4PMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22THR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4PMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 49Right-handed alpha
Helix 2
AA2
A
59 64Right-handed alpha
Helix 3
AA3
A
72 85Right-handed alpha
Helix 4
AA4
A
102 107Right-handed 310
Helix 5
AA5
A
108 127Right-handed alpha
Helix 6
AA6
A
154 159Right-handed 310
Helix 7
AA7
A
166 180Right-handed alpha
Helix 8
AA8
A
195 212Right-handed alpha
Helix 9
AA9
A
223 227Right-handed 310
Helix 10
AB1
A
232 245Right-handed alpha
Helix 11
AB2
A
261 278Right-handed alpha
Helix 12
AB3
A
311 324Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 4PMX.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
32 37parallel
Strand 3
A
282 287parallel
Strand 4
A
250 255parallel
Strand 5
A
217 220parallel
Strand 6
A
185 188parallel
Strand 7
A
132 137parallel
Strand 8
A
90 95parallel
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