Analysis of interatomic Contacts of Structural Units in PDB entry:
4POF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4POF entry

There are 5 chains in PDB entry 4POF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 0LYS 254
B
SER 0LYS 254
C
SER 0LYS 254
D
SER 0LYS 254
E
SER 0ARG 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4POF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 17Right-handed alpha
Helix 2
2
A
24 32Right-handed alpha
Helix 3
3
A
46 53Right-handed alpha
Helix 4
4
A
53 63Right-handed alpha
Helix 5
5
A
63 84Right-handed alpha
Helix 6
6
A
105 107Right-handed 310
Helix 7
7
A
108 112Right-handed 310
Helix 8
8
A
190 194Right-handed 310
Helix 9
9
A
210 212Right-handed 310
Helix 10
10
B
2 17Right-handed alpha
Helix 11
11
B
24 32Right-handed alpha
Helix 12
12
B
46 53Right-handed alpha
Helix 13
13
B
53 63Right-handed alpha
Helix 14
14
B
63 84Right-handed alpha
Helix 15
15
B
105 107Right-handed 310
Helix 16
16
B
108 112Right-handed 310
Helix 17
17
B
190 194Right-handed 310
Helix 18
18
B
210 212Right-handed 310
Helix 19
19
C
2 17Right-handed alpha
Helix 20
20
C
24 32Right-handed alpha
Helix 21
21
C
46 53Right-handed alpha
Helix 22
22
C
53 63Right-handed alpha
Helix 23
23
C
63 84Right-handed alpha
Helix 24
24
C
105 107Right-handed 310
Helix 25
25
C
108 112Right-handed 310
Helix 26
26
C
190 194Right-handed 310
Helix 27
27
C
210 212Right-handed 310
Helix 28
28
D
2 17Right-handed alpha
Helix 29
29
D
24 32Right-handed alpha
Helix 30
30
D
46 53Right-handed alpha
Helix 31
31
D
53 63Right-handed alpha
Helix 32
32
D
63 84Right-handed alpha
Helix 33
33
D
105 107Right-handed 310
Helix 34
34
D
190 194Right-handed 310
Helix 35
35
D
210 212Right-handed 310
Helix 36
36
E
2 17Right-handed alpha
Helix 37
37
E
24 32Right-handed alpha
Helix 38
38
E
46 53Right-handed alpha
Helix 39
39
E
53 63Right-handed alpha
Helix 40
40
E
63 84Right-handed alpha
Helix 41
41
E
105 107Right-handed 310
Helix 42
42
E
108 112Right-handed 310
Helix 43
43
E
190 194Right-handed 310
Helix 44
44
E
210 212Right-handed 310
Helix 45
45
F
2 17Right-handed alpha
Helix 46
46
F
24 32Right-handed alpha
Helix 47
47
F
46 53Right-handed alpha
Helix 48
48
F
53 63Right-handed alpha
Helix 49
49
F
63 84Right-handed alpha
Helix 50
50
F
105 107Right-handed 310
Helix 51
51
F
108 112Right-handed 310
Helix 52
52
F
190 194Right-handed 310
Helix 53
53
F
210 212Right-handed 310
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There are 24 sheets in PDB entry 4POF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 45first strand
Strand 2
A
92 96parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
101 103first strand
Strand 2
A
115 125parallel
Strand 3
A
178 188anti-parallel
Strand 4
A
129 139anti-parallel
Strand 5
A
145 149anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
145 149first strand
Strand 2
A
129 139anti-parallel
Strand 3
A
170 172anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
170 172first strand
Strand 2
A
129 139anti-parallel
Strand 3
A
178 188anti-parallel
Strand 4
A
202 208anti-parallel
Strand 5
A
240 251parallel
Strand 6
A
220 231anti-parallel
Strand 7
A
115 125anti-parallel
Strand 8
A
101 103parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
41 45first strand
Strand 2
B
92 96parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 103first strand
Strand 2
B
115 125parallel
Strand 3
B
178 188anti-parallel
Strand 4
B
129 139anti-parallel
Strand 5
B
145 149anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
145 149first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
170 172anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
170 172first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
178 188anti-parallel
Strand 4
B
202 208anti-parallel
Strand 5
B
240 251parallel
Strand 6
B
220 231anti-parallel
Strand 7
B
115 125anti-parallel
Strand 8
B
101 103parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
41 45first strand
Strand 2
C
92 96parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
101 103first strand
Strand 2
C
115 125parallel
Strand 3
C
178 188anti-parallel
Strand 4
C
129 139anti-parallel
Strand 5
C
145 149anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
145 149first strand
Strand 2
C
129 139anti-parallel
Strand 3
C
170 172anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
170 172first strand
Strand 2
C
129 139anti-parallel
Strand 3
C
178 188anti-parallel
Strand 4
C
202 208anti-parallel
Strand 5
C
240 251parallel
Strand 6
C
220 231anti-parallel
Strand 7
C
115 125anti-parallel
Strand 8
C
101 103parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
41 45first strand
Strand 2
D
92 96parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
101 103first strand
Strand 2
D
115 125parallel
Strand 3
D
178 188anti-parallel
Strand 4
D
129 139anti-parallel
Strand 5
D
145 149anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
145 149first strand
Strand 2
D
129 139anti-parallel
Strand 3
D
170 172anti-parallel
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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
170 172first strand
Strand 2
D
129 139anti-parallel
Strand 3
D
178 188anti-parallel
Strand 4
D
202 208anti-parallel
Strand 5
D
240 251parallel
Strand 6
D
220 231anti-parallel
Strand 7
D
115 125anti-parallel
Strand 8
D
101 103parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
41 45first strand
Strand 2
E
92 96parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
101 103first strand
Strand 2
E
115 125parallel
Strand 3
E
178 188anti-parallel
Strand 4
E
129 139anti-parallel
Strand 5
E
145 149anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
145 149first strand
Strand 2
E
129 139anti-parallel
Strand 3
E
170 172anti-parallel
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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
170 172first strand
Strand 2
E
129 139anti-parallel
Strand 3
E
178 188anti-parallel
Strand 4
E
202 208anti-parallel
Strand 5
E
240 251parallel
Strand 6
E
220 231anti-parallel
Strand 7
E
115 125anti-parallel
Strand 8
E
101 103parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
41 45first strand
Strand 2
F
92 96parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
101 103first strand
Strand 2
F
115 125parallel
Strand 3
F
178 188anti-parallel
Strand 4
F
129 139anti-parallel
Strand 5
F
145 149anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
145 149first strand
Strand 2
F
129 139anti-parallel
Strand 3
F
170 172anti-parallel
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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
170 172first strand
Strand 2
F
129 139anti-parallel
Strand 3
F
178 188anti-parallel
Strand 4
F
202 208anti-parallel
Strand 5
F
240 251parallel
Strand 6
F
220 231anti-parallel
Strand 7
F
115 125anti-parallel
Strand 8
F
101 103parallel
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