Analysis of interatomic Contacts of Structural Units in PDB entry:
4PPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PPB entry

There are 2 chains in PDB entry 4PPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 356GLY 619
B
 SER 356GLY 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4PPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
359 361Right-handed 310
Helix 2
2
A
403 413Right-handed alpha
Helix 3
3
A
443 450Right-handed alpha
Helix 4
4
A
455 476Right-handed alpha
Helix 5
5
A
484 486Right-handed 310
Helix 6
6
A
492 494Right-handed 310
Helix 7
7
A
521 525Right-handed 310
Helix 8
8
A
526 533Right-handed alpha
Helix 9
9
A
536 553Right-handed alpha
Helix 10
10
A
563 574Right-handed alpha
Helix 11
11
A
584 595Right-handed alpha
Helix 12
12
A
598 602Right-handed 310
Helix 13
13
A
604 619Right-handed alpha
Helix 14
14
B
359 361Right-handed 310
Helix 15
15
B
404 412Right-handed alpha
Helix 16
16
B
442 450Right-handed alpha
Helix 17
17
B
455 476Right-handed alpha
Helix 18
18
B
484 486Right-handed 310
Helix 19
19
B
492 494Right-handed 310
Helix 20
20
B
521 525Right-handed 310
Helix 21
21
B
526 533Right-handed alpha
Helix 22
22
B
536 553Right-handed alpha
Helix 23
23
B
563 573Right-handed alpha
Helix 24
24
B
584 595Right-handed alpha
Helix 25
25
B
598 602Right-handed 310
Helix 26
26
B
604 618Right-handed alpha
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There are 4 sheets in PDB entry 4PPB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 372first strand
Strand 2
A
375 392anti-parallel
Strand 3
B
376 392anti-parallel
Strand 4
B
363 371anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 425first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
375 392anti-parallel
Strand 4
B
376 392anti-parallel
Strand 5
B
432 436anti-parallel
Strand 6
B
421 425anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
488 490anti-parallel
Strand 3
A
496 498anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 490first strand
Strand 2
B
496 498anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il