Analysis of interatomic Contacts of Structural Units in PDB entry:
4PUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PUT entry

There is 1 chain in PDB entry 4PUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6LEU 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 4PUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 14Right-handed 310
Helix 2
2
A
25 51Right-handed alpha
Helix 3
3
A
58 83Right-handed alpha
Helix 4
4
A
85 108Right-handed alpha
Helix 5
5
A
109 122Right-handed alpha
Helix 6
6
A
123 128Right-handed 310
Helix 7
7
A
129 146Right-handed alpha
Helix 8
8
A
151 182Right-handed alpha
Helix 9
9
A
189 194Right-handed 310
Helix 10
10
A
197 211Right-handed alpha
Helix 11
11
A
228 239Right-handed alpha
Helix 12
12
A
241 253Right-handed alpha
Helix 13
13
A
263 281Right-handed alpha
Helix 14
14
A
285 292Right-handed alpha
Helix 15
15
A
297 330Right-handed alpha
Helix 16
16
A
339 355Right-handed alpha
Helix 17
17
A
358 366Right-handed 310
Helix 18
18
A
367 384Right-handed alpha
Helix 19
19
A
474 493Right-handed alpha
Helix 20
20
A
498 502Right-handed 310
Helix 21
21
A
508 513Right-handed alpha
Helix 22
22
A
513 521Right-handed alpha
Helix 23
23
A
522 524Right-handed 310
Helix 24
24
A
525 533Right-handed alpha
Helix 25
25
A
543 556Right-handed alpha
Helix 26
26
A
557 578Right-handed alpha
Helix 27
27
A
586 599Right-handed alpha
Helix 28
28
A
609 612Right-handed 310
Helix 29
29
A
613 618Right-handed alpha
Helix 30
30
A
626 646Right-handed alpha
Helix 31
31
A
649 662Right-handed alpha
Helix 32
32
A
672 682Right-handed alpha
Helix 33
33
A
687 694Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4PUT. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
223 226anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
402 407anti-parallel
Strand 3
A
413 422anti-parallel
Strand 4
A
455 462parallel
Strand 5
A
433 438anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il