Analysis of interatomic Contacts of Structural Units in PDB entry:
4PVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PVD entry

There are 4 chains in PDB entry 4PVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 342
B
 MET 1ILE 342
C
 MET 1ARG 341
D
 MET 1GLY 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 4PVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
33 44Right-handed alpha
Helix 3
3
A
64 72Right-handed alpha
Helix 4
4
A
91 96Right-handed alpha
Helix 5
5
A
96 115Right-handed alpha
Helix 6
6
A
127 131Right-handed 310
Helix 7
7
A
133 137Right-handed 310
Helix 8
8
A
155 159Right-handed 310
Helix 9
9
A
160 183Right-handed alpha
Helix 10
10
A
205 209Right-handed 310
Helix 11
11
A
214 224Right-handed alpha
Helix 12
12
A
242 255Right-handed alpha
Helix 13
13
A
272 283Right-handed alpha
Helix 14
14
A
310 318Right-handed alpha
Helix 15
15
A
323 340Right-handed alpha
Helix 16
16
B
10 23Right-handed alpha
Helix 17
17
B
33 44Right-handed alpha
Helix 18
18
B
64 72Right-handed alpha
Helix 19
19
B
91 96Right-handed alpha
Helix 20
20
B
96 115Right-handed alpha
Helix 21
21
B
127 131Right-handed 310
Helix 22
22
B
133 137Right-handed 310
Helix 23
23
B
155 159Right-handed 310
Helix 24
24
B
160 183Right-handed alpha
Helix 25
25
B
205 209Right-handed 310
Helix 26
26
B
214 225Right-handed alpha
Helix 27
27
B
242 255Right-handed alpha
Helix 28
28
B
272 283Right-handed alpha
Helix 29
29
B
310 318Right-handed alpha
Helix 30
30
B
323 339Right-handed alpha
Helix 31
31
C
10 23Right-handed alpha
Helix 32
32
C
33 44Right-handed alpha
Helix 33
33
C
64 72Right-handed alpha
Helix 34
34
C
98 115Right-handed alpha
Helix 35
35
C
127 131Right-handed 310
Helix 36
36
C
135 139Right-handed 310
Helix 37
37
C
170 184Right-handed alpha
Helix 38
38
C
205 209Right-handed 310
Helix 39
39
C
219 225Right-handed alpha
Helix 40
40
C
242 255Right-handed alpha
Helix 41
41
C
272 283Right-handed alpha
Helix 42
42
C
310 318Right-handed alpha
Helix 43
43
C
323 341Right-handed alpha
Helix 44
44
D
10 23Right-handed alpha
Helix 45
45
D
33 44Right-handed alpha
Helix 46
46
D
64 72Right-handed alpha
Helix 47
47
D
97 115Right-handed alpha
Helix 48
48
D
127 131Right-handed 310
Helix 49
49
D
169 183Right-handed alpha
Helix 50
50
D
205 209Right-handed 310
Helix 51
51
D
218 225Right-handed alpha
Helix 52
52
D
242 255Right-handed alpha
Helix 53
53
D
272 283Right-handed alpha
Helix 54
54
D
310 318Right-handed alpha
Helix 55
55
D
323 341Right-handed alpha
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There are 12 sheets in PDB entry 4PVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
75 80parallel
Strand 5
A
121 125parallel
Strand 6
A
190 196parallel
Strand 7
A
262 265parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
307 308parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
236 241parallel
Strand 3
A
268 271anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
26 31parallel
Strand 3
B
2 6parallel
Strand 4
B
75 80parallel
Strand 5
B
121 125parallel
Strand 6
B
190 196parallel
Strand 7
B
262 265parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
307 309parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
236 241parallel
Strand 3
B
268 271anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
26 31parallel
Strand 3
C
2 5parallel
Strand 4
C
75 80parallel
Strand 5
C
121 125parallel
Strand 6
C
190 196parallel
Strand 7
C
262 265parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
307 308parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 200first strand
Strand 2
C
236 241parallel
Strand 3
C
268 271anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 54first strand
Strand 2
D
26 31parallel
Strand 3
D
2 6parallel
Strand 4
D
75 80parallel
Strand 5
D
121 125parallel
Strand 6
D
190 196parallel
Strand 7
D
262 265parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
143 144first strand
Strand 2
D
307 308parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 200first strand
Strand 2
D
236 241parallel
Strand 3
D
268 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il