Analysis of interatomic Contacts of Structural Units in PDB entry:
4PVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PVI entry

There is 1 chain in PDB entry 4PVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -7GLN 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4PVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 93Right-handed 310
Helix 2
2
A
99 101Right-handed 310
Helix 3
3
A
117 120Right-handed 310
Helix 4
4
A
141 145Right-handed 310
Helix 5
5
A
157 164Right-handed alpha
Helix 6
6
A
224 229Right-handed 310
Helix 7
7
A
286 288Right-handed 310
Helix 8
8
A
337 341Right-handed 310
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There are 5 sheets in PDB entry 4PVI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
34 36parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
324 329anti-parallel
Strand 5
A
302 306anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 61first strand
Strand 2
A
64 73anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
96 97anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 116first strand
Strand 2
A
121 127anti-parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
149 150anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 176first strand
Strand 2
A
186 192anti-parallel
Strand 3
A
197 204anti-parallel
Strand 4
A
216 220anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
259 266anti-parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
230 237anti-parallel
Strand 5
A
316 317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il