Analysis of interatomic Contacts of Structural Units in PDB entry:
4PVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PVV entry

There is 1 chain in PDB entry 4PVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4PVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 26Right-handed alpha
Helix 2
2
A
48 60Right-handed alpha
Helix 3
3
A
74 84Right-handed alpha
Helix 4
4
A
88 91Right-handed 310
Helix 5
5
A
121 126Right-handed 310
Helix 6
6
A
129 137Right-handed alpha
Helix 7
7
A
148 162Right-handed alpha
Helix 8
8
A
172 177Right-handed alpha
Helix 9
9
A
178 184Right-handed alpha
Helix 10
10
A
196 207Right-handed alpha
Helix 11
11
A
209 217Right-handed alpha
Helix 12
12
A
254 268Right-handed alpha
Helix 13
13
A
272 288Right-handed alpha
Helix 14
14
A
299 311Right-handed alpha
Helix 15
15
A
312 324Right-handed alpha
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There are 4 sheets in PDB entry 4PVV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
64 67parallel
Strand 3
A
3 6parallel
Strand 4
A
141 144parallel
Strand 5
A
166 168parallel
Strand 6
A
191 195parallel
Strand 7
A
220 223parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
99 106parallel
Strand 4
A
112 119anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
92 93parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
240 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il