Analysis of interatomic Contacts of Structural Units in PDB entry:
4PZ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PZ2 entry

There are 3 chains in PDB entry 4PZ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 27ILE 519
B
 LEU 26ILE 519
C
 LEU 27GLU 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 4PZ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 88Right-handed alpha
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
95 113Right-handed alpha
Helix 4
4
A
113 126Right-handed alpha
Helix 5
5
A
128 135Right-handed alpha
Helix 6
6
A
135 149Right-handed alpha
Helix 7
7
A
185 201Right-handed alpha
Helix 8
8
A
213 227Right-handed alpha
Helix 9
9
A
242 249Right-handed alpha
Helix 10
10
A
261 274Right-handed alpha
Helix 11
11
A
297 311Right-handed alpha
Helix 12
12
A
312 315Right-handed 310
Helix 13
13
A
327 342Right-handed alpha
Helix 14
14
A
362 379Right-handed alpha
Helix 15
15
A
411 416Right-handed alpha
Helix 16
16
A
430 439Right-handed alpha
Helix 17
17
A
453 464Right-handed alpha
Helix 18
18
A
486 488Right-handed 310
Helix 19
19
A
496 502Right-handed 310
Helix 20
20
B
71 88Right-handed alpha
Helix 21
21
B
90 94Right-handed 310
Helix 22
22
B
95 113Right-handed alpha
Helix 23
23
B
113 126Right-handed alpha
Helix 24
24
B
128 135Right-handed alpha
Helix 25
25
B
135 149Right-handed alpha
Helix 26
26
B
185 201Right-handed alpha
Helix 27
27
B
213 227Right-handed alpha
Helix 28
28
B
239 249Right-handed alpha
Helix 29
29
B
261 274Right-handed alpha
Helix 30
30
B
297 311Right-handed alpha
Helix 31
31
B
312 315Right-handed 310
Helix 32
32
B
329 342Right-handed alpha
Helix 33
33
B
362 379Right-handed alpha
Helix 34
34
B
411 416Right-handed alpha
Helix 35
35
B
430 439Right-handed alpha
Helix 36
36
B
453 464Right-handed alpha
Helix 37
37
B
486 488Right-handed 310
Helix 38
38
B
496 502Right-handed 310
Helix 39
39
C
71 88Right-handed alpha
Helix 40
40
C
90 94Right-handed 310
Helix 41
41
C
95 113Right-handed alpha
Helix 42
42
C
113 126Right-handed alpha
Helix 43
43
C
128 135Right-handed alpha
Helix 44
44
C
135 149Right-handed alpha
Helix 45
45
C
185 201Right-handed alpha
Helix 46
46
C
213 227Right-handed alpha
Helix 47
47
C
242 249Right-handed alpha
Helix 48
48
C
261 274Right-handed alpha
Helix 49
49
C
297 311Right-handed alpha
Helix 50
50
C
312 315Right-handed 310
Helix 51
51
C
327 342Right-handed alpha
Helix 52
52
C
362 379Right-handed alpha
Helix 53
53
C
411 416Right-handed alpha
Helix 54
54
C
430 439Right-handed alpha
Helix 55
55
C
453 464Right-handed alpha
Helix 56
56
C
486 488Right-handed 310
Helix 57
57
C
496 502Right-handed 310
Helix 58
58
D
71 88Right-handed alpha
Helix 59
59
D
90 94Right-handed 310
Helix 60
60
D
95 113Right-handed alpha
Helix 61
61
D
113 126Right-handed alpha
Helix 62
62
D
128 135Right-handed alpha
Helix 63
63
D
135 149Right-handed alpha
Helix 64
64
D
185 201Right-handed alpha
Helix 65
65
D
213 227Right-handed alpha
Helix 66
66
D
242 249Right-handed alpha
Helix 67
67
D
261 274Right-handed alpha
Helix 68
68
D
297 311Right-handed alpha
Helix 69
69
D
312 315Right-handed 310
Helix 70
70
D
329 342Right-handed alpha
Helix 71
71
D
362 379Right-handed alpha
Helix 72
72
D
411 416Right-handed alpha
Helix 73
73
D
430 440Right-handed alpha
Helix 74
74
D
453 464Right-handed alpha
Helix 75
75
D
486 488Right-handed 310
Helix 76
76
D
496 502Right-handed 310
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There are 18 sheets in PDB entry 4PZ2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
43 45anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
63 68anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
382 385first strand
Strand 2
C
402 405anti-parallel
Strand 3
C
422 428parallel
Strand 4
C
322 326parallel
Strand 5
C
289 292parallel
Strand 6
C
446 450parallel
Strand 7
C
468 471parallel
Strand 8
A
504 512parallel
Strand 9
A
165 173anti-parallel
Strand 10
A
156 159anti-parallel
Strand 11
D
156 158anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
203 207parallel
Strand 3
A
176 180parallel
Strand 4
A
255 259parallel
Strand 5
A
280 283parallel
Strand 6
A
490 491anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
A
402 405anti-parallel
Strand 3
A
422 428parallel
Strand 4
A
322 326parallel
Strand 5
A
289 292parallel
Strand 6
A
446 450parallel
Strand 7
A
468 471parallel
Strand 8
C
504 512parallel
Strand 9
C
165 173anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
43 45anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
63 68anti-parallel
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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 158first strand
Strand 2
B
156 159anti-parallel
Strand 3
B
165 173anti-parallel
Strand 4
B
504 512anti-parallel
Strand 5
D
468 471parallel
Strand 6
D
446 450parallel
Strand 7
D
289 292parallel
Strand 8
D
322 326parallel
Strand 9
D
422 428parallel
Strand 10
D
402 405parallel
Strand 11
D
382 385anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
203 207parallel
Strand 3
B
176 180parallel
Strand 4
B
255 259parallel
Strand 5
B
280 283parallel
Strand 6
B
490 491anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 385first strand
Strand 2
B
402 405anti-parallel
Strand 3
B
422 428parallel
Strand 4
B
322 326parallel
Strand 5
B
289 292parallel
Strand 6
B
446 450parallel
Strand 7
B
468 471parallel
Strand 8
D
504 512parallel
Strand 9
D
165 173anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 390first strand
Strand 2
B
398 399anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
43 45anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
63 68anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 235first strand
Strand 2
C
203 207parallel
Strand 3
C
176 180parallel
Strand 4
C
255 259parallel
Strand 5
C
280 283parallel
Strand 6
C
490 491anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 40first strand
Strand 2
D
43 45anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 56first strand
Strand 2
D
63 68anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
233 235first strand
Strand 2
D
203 207parallel
Strand 3
D
176 180parallel
Strand 4
D
255 259parallel
Strand 5
D
280 283parallel
Strand 6
D
490 491anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
389 390first strand
Strand 2
D
398 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il