Analysis of interatomic Contacts of Structural Units in PDB entry:
4PZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PZ6 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 4PZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LYS 372
B
 SER 0LYS 371
P
 PRO 106TYR 108
P
 PRO 110THR 111
Q
 PRO 106TYR 108
Q
 PRO 110THR 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 4PZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 35Right-handed alpha
Helix 2
2
A
52 60Right-handed alpha
Helix 3
3
A
158 170Right-handed alpha
Helix 4
4
A
170 181Right-handed alpha
Helix 5
5
A
181 186Right-handed alpha
Helix 6
6
A
202 209Right-handed alpha
Helix 7
7
A
210 214Right-handed 310
Helix 8
8
A
243 247Right-handed 310
Helix 9
9
A
293 303Right-handed alpha
Helix 10
10
A
336 349Right-handed alpha
Helix 11
11
A
352 358Right-handed alpha
Helix 12
12
A
359 371Right-handed alpha
Helix 13
13
B
19 35Right-handed alpha
Helix 14
14
B
52 60Right-handed alpha
Helix 15
15
B
158 170Right-handed alpha
Helix 16
16
B
170 181Right-handed alpha
Helix 17
17
B
181 186Right-handed alpha
Helix 18
18
B
202 209Right-handed alpha
Helix 19
19
B
210 214Right-handed 310
Helix 20
20
B
243 246Right-handed 310
Helix 21
21
B
293 303Right-handed alpha
Helix 22
22
B
336 349Right-handed alpha
Helix 23
23
B
352 359Right-handed alpha
Helix 24
24
B
359 370Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4PZ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
71 79anti-parallel
Strand 5
A
121 132anti-parallel
Strand 6
A
136 149anti-parallel
Strand 7
A
152 153anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
71 79anti-parallel
Strand 5
A
121 132anti-parallel
Strand 6
A
136 149anti-parallel
Strand 7
A
191 194parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
233 241parallel
Strand 3
A
218 225anti-parallel
Strand 4
A
62 68anti-parallel
Strand 5
A
197 199anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 289first strand
Strand 2
A
272 278anti-parallel
Strand 3
A
249 256anti-parallel
Strand 4
A
310 316anti-parallel
Strand 5
A
322 327anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
98 101anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
71 79anti-parallel
Strand 5
B
121 132anti-parallel
Strand 6
B
136 149anti-parallel
Strand 7
B
152 153anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
98 101anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
71 79anti-parallel
Strand 5
B
121 132anti-parallel
Strand 6
B
136 149anti-parallel
Strand 7
B
191 194parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
233 241parallel
Strand 3
B
218 225anti-parallel
Strand 4
B
62 68anti-parallel
Strand 5
B
198 199anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 289first strand
Strand 2
B
272 278anti-parallel
Strand 3
B
248 256anti-parallel
Strand 4
B
310 316anti-parallel
Strand 5
B
322 327anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il