Analysis of interatomic Contacts of Structural Units in PDB entry:
4PZD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4PZD entry

There are 9 chains in PDB entry 4PZD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LYS 284
B	SER 2	LYS 284
C	SER 2	LYS 284
D	SER 2	LYS 284
E	SER 2	LYS 284
F	SER 2	LYS 284
G	SER 2	LYS 284
H	SER 2	LYS 284
I	SER 2	LYS 284

There are134 helices in PDB entry 4PZD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	24	Right-handed alpha
Helix 2	2	A	36	55	Right-handed alpha
Helix 3	3	A	60	70	Right-handed alpha
Helix 4	4	A	77	82	Right-handed 310
Helix 5	5	A	93	108	Right-handed alpha
Helix 6	6	A	122	128	Right-handed alpha
Helix 7	7	A	132	134	Right-handed 310
Helix 8	8	A	160	174	Right-handed alpha
Helix 9	9	A	188	206	Right-handed alpha
Helix 10	10	A	210	223	Right-handed alpha
Helix 11	11	A	227	236	Right-handed alpha
Helix 12	12	A	236	252	Right-handed alpha
Helix 13	13	A	253	257	Right-handed 310
Helix 14	14	A	259	269	Right-handed alpha
Helix 15	15	B	12	24	Right-handed alpha
Helix 16	16	B	36	56	Right-handed alpha
Helix 17	17	B	60	71	Right-handed alpha
Helix 18	18	B	78	83	Right-handed 310
Helix 19	19	B	93	108	Right-handed alpha
Helix 20	20	B	122	128	Right-handed alpha
Helix 21	21	B	132	134	Right-handed 310
Helix 22	22	B	160	174	Right-handed alpha
Helix 23	23	B	188	206	Right-handed alpha
Helix 24	24	B	210	223	Right-handed alpha
Helix 25	25	B	227	236	Right-handed alpha
Helix 26	26	B	236	252	Right-handed alpha
Helix 27	27	B	253	257	Right-handed 310
Helix 28	28	B	259	268	Right-handed alpha
Helix 29	29	B	272	276	Right-handed 310
Helix 30	30	C	12	24	Right-handed alpha
Helix 31	31	C	35	56	Right-handed alpha
Helix 32	32	C	60	69	Right-handed alpha
Helix 33	33	C	76	83	Right-handed 310
Helix 34	34	C	93	108	Right-handed alpha
Helix 35	35	C	122	129	Right-handed alpha
Helix 36	36	C	132	134	Right-handed 310
Helix 37	37	C	160	174	Right-handed alpha
Helix 38	38	C	188	206	Right-handed alpha
Helix 39	39	C	210	223	Right-handed alpha
Helix 40	40	C	227	236	Right-handed alpha
Helix 41	41	C	236	252	Right-handed alpha
Helix 42	42	C	253	257	Right-handed 310
Helix 43	43	C	259	268	Right-handed alpha
Helix 44	44	C	272	276	Right-handed 310
Helix 45	45	D	12	24	Right-handed alpha
Helix 46	46	D	36	55	Right-handed alpha
Helix 47	47	D	61	71	Right-handed alpha
Helix 48	48	D	76	82	Right-handed 310
Helix 49	49	D	93	108	Right-handed alpha
Helix 50	50	D	122	128	Right-handed alpha
Helix 51	51	D	132	134	Right-handed 310
Helix 52	52	D	160	174	Right-handed alpha
Helix 53	53	D	188	206	Right-handed alpha
Helix 54	54	D	210	223	Right-handed alpha
Helix 55	55	D	227	236	Right-handed alpha
Helix 56	56	D	236	252	Right-handed alpha
Helix 57	57	D	253	257	Right-handed 310
Helix 58	58	D	259	269	Right-handed alpha
Helix 59	59	D	272	276	Right-handed 310
Helix 60	60	E	14	25	Right-handed alpha
Helix 61	61	E	36	56	Right-handed alpha
Helix 62	62	E	60	71	Right-handed alpha
Helix 63	63	E	78	83	Right-handed 310
Helix 64	64	E	93	108	Right-handed alpha
Helix 65	65	E	122	128	Right-handed alpha
Helix 66	66	E	132	134	Right-handed 310
Helix 67	67	E	160	174	Right-handed alpha
Helix 68	68	E	188	206	Right-handed alpha
Helix 69	69	E	210	223	Right-handed alpha
Helix 70	70	E	227	236	Right-handed alpha
Helix 71	71	E	236	252	Right-handed alpha
Helix 72	72	E	253	257	Right-handed 310
Helix 73	73	E	259	268	Right-handed alpha
Helix 74	74	E	272	276	Right-handed 310
Helix 75	75	F	12	24	Right-handed alpha
Helix 76	76	F	35	56	Right-handed alpha
Helix 77	77	F	60	69	Right-handed alpha
Helix 78	78	F	76	83	Right-handed 310
Helix 79	79	F	93	108	Right-handed alpha
Helix 80	80	F	122	129	Right-handed alpha
Helix 81	81	F	132	134	Right-handed 310
Helix 82	82	F	160	174	Right-handed alpha
Helix 83	83	F	188	206	Right-handed alpha
Helix 84	84	F	210	223	Right-handed alpha
Helix 85	85	F	227	236	Right-handed alpha
Helix 86	86	F	236	252	Right-handed alpha
Helix 87	87	F	253	257	Right-handed 310
Helix 88	88	F	259	269	Right-handed alpha
Helix 89	89	F	272	276	Right-handed 310
Helix 90	90	G	12	24	Right-handed alpha
Helix 91	91	G	36	56	Right-handed alpha
Helix 92	92	G	60	71	Right-handed alpha
Helix 93	93	G	76	82	Right-handed 310
Helix 94	94	G	93	108	Right-handed alpha
Helix 95	95	G	122	128	Right-handed alpha
Helix 96	96	G	132	134	Right-handed 310
Helix 97	97	G	160	174	Right-handed alpha
Helix 98	98	G	188	206	Right-handed alpha
Helix 99	99	G	210	223	Right-handed alpha
Helix 100	100	G	227	236	Right-handed alpha
Helix 101	101	G	236	252	Right-handed alpha
Helix 102	102	G	253	257	Right-handed 310
Helix 103	103	G	259	269	Right-handed alpha
Helix 104	104	G	272	276	Right-handed 310
Helix 105	105	H	12	24	Right-handed alpha
Helix 106	106	H	36	56	Right-handed alpha
Helix 107	107	H	60	71	Right-handed alpha
Helix 108	108	H	76	83	Right-handed 310
Helix 109	109	H	93	108	Right-handed alpha
Helix 110	110	H	122	129	Right-handed alpha
Helix 111	111	H	132	134	Right-handed 310
Helix 112	112	H	160	174	Right-handed alpha
Helix 113	113	H	188	206	Right-handed alpha
Helix 114	114	H	210	223	Right-handed alpha
Helix 115	115	H	227	236	Right-handed alpha
Helix 116	116	H	236	252	Right-handed alpha
Helix 117	117	H	253	257	Right-handed 310
Helix 118	118	H	259	268	Right-handed alpha
Helix 119	119	H	272	276	Right-handed 310
Helix 120	120	I	12	24	Right-handed alpha
Helix 121	121	I	35	56	Right-handed alpha
Helix 122	122	I	60	69	Right-handed alpha
Helix 123	123	I	76	83	Right-handed 310
Helix 124	124	I	93	108	Right-handed alpha
Helix 125	125	I	122	129	Right-handed alpha
Helix 126	126	I	132	134	Right-handed 310
Helix 127	127	I	160	174	Right-handed alpha
Helix 128	128	I	188	206	Right-handed alpha
Helix 129	129	I	210	223	Right-handed alpha
Helix 130	130	I	227	236	Right-handed alpha
Helix 131	131	I	236	252	Right-handed alpha
Helix 132	132	I	253	257	Right-handed 310
Helix 133	133	I	259	268	Right-handed alpha
Helix 134	134	I	272	276	Right-handed 310

There are 10 sheets in PDB entry 4PZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	74	first strand
Strand 2	A	28	32	parallel
Strand 3	A	5	9	parallel
Strand 4	A	85	88	parallel
Strand 5	A	113	117	parallel
Strand 6	A	136	141	parallel
Strand 7	A	150	155	anti-parallel
Strand 8	A	177	182	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	5	7	parallel
Strand 3	B	85	88	parallel
Strand 4	B	113	117	parallel
Strand 5	B	136	139	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	177	182	parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	74	first strand
Strand 2	C	28	32	parallel
Strand 3	C	5	9	parallel
Strand 4	C	85	88	parallel
Strand 5	C	113	116	parallel
Strand 6	C	136	140	parallel
Strand 7	C	150	155	anti-parallel
Strand 8	C	177	182	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	5	9	parallel
Strand 3	D	85	88	parallel
Strand 4	D	113	117	parallel
Strand 5	D	136	141	parallel
Strand 6	D	150	155	anti-parallel
Strand 7	D	177	182	parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	32	first strand
Strand 2	E	5	9	parallel
Strand 3	E	85	88	parallel
Strand 4	E	113	117	parallel
Strand 5	E	136	141	parallel
Strand 6	E	150	155	anti-parallel
Strand 7	E	177	182	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	74	first strand
Strand 2	F	28	32	parallel
Strand 3	F	5	9	parallel
Strand 4	F	85	88	parallel
Strand 5	F	113	116	parallel
Strand 6	F	136	140	parallel
Strand 7	F	150	155	anti-parallel
Strand 8	F	177	182	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	32	first strand
Strand 2	G	5	9	parallel
Strand 3	G	85	88	parallel
Strand 4	G	113	117	parallel
Strand 5	G	136	141	parallel
Strand 6	G	150	155	anti-parallel
Strand 7	G	177	182	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	30	first strand
Strand 2	H	5	7	parallel
Strand 3	H	85	88	parallel
Strand 4	H	113	117	parallel
Strand 5	H	136	141	parallel
Strand 6	H	150	155	anti-parallel
Strand 7	H	177	182	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	74	first strand
Strand 2	I	28	32	parallel
Strand 3	I	5	9	parallel
Strand 4	I	85	88	parallel
Strand 5	I	113	116	parallel
Strand 6	I	136	140	parallel
Strand 7	I	150	155	anti-parallel
Strand 8	I	177	182	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4PZD

Analysis of interatomic Contacts of Structural Units in PDB entry:
4PZD