Analysis of interatomic Contacts of Structural Units in PDB entry:
4PZL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PZL entry

There are 4 chains in PDB entry 4PZL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -9LYS 217
B
 THR -9ARG 218
C
 ASN -1LYS 217
D
 ALA 0LYS 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4PZL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
31 42Right-handed alpha
Helix 3
3
A
43 55Right-handed alpha
Helix 4
4
A
60 72Right-handed alpha
Helix 5
5
A
73 78Right-handed 310
Helix 6
6
A
89 99Right-handed alpha
Helix 7
7
A
112 122Right-handed alpha
Helix 8
8
A
156 159Right-handed 310
Helix 9
9
A
160 184Right-handed alpha
Helix 10
10
A
203 217Right-handed alpha
Helix 11
11
B
12 25Right-handed alpha
Helix 12
12
B
31 41Right-handed alpha
Helix 13
13
B
43 55Right-handed alpha
Helix 14
14
B
60 72Right-handed alpha
Helix 15
15
B
73 78Right-handed 310
Helix 16
16
B
89 99Right-handed alpha
Helix 17
17
B
112 122Right-handed alpha
Helix 18
18
B
156 159Right-handed 310
Helix 19
19
B
160 184Right-handed alpha
Helix 20
20
B
203 216Right-handed alpha
Helix 21
21
C
12 25Right-handed alpha
Helix 22
22
C
31 42Right-handed alpha
Helix 23
23
C
43 55Right-handed alpha
Helix 24
24
C
60 72Right-handed alpha
Helix 25
25
C
73 78Right-handed 310
Helix 26
26
C
89 99Right-handed alpha
Helix 27
27
C
112 122Right-handed alpha
Helix 28
28
C
156 159Right-handed 310
Helix 29
29
C
160 184Right-handed alpha
Helix 30
30
C
203 216Right-handed alpha
Helix 31
31
D
12 25Right-handed alpha
Helix 32
32
D
31 42Right-handed alpha
Helix 33
33
D
43 55Right-handed alpha
Helix 34
34
D
60 72Right-handed alpha
Helix 35
35
D
73 78Right-handed 310
Helix 36
36
D
89 98Right-handed alpha
Helix 37
37
D
112 122Right-handed alpha
Helix 38
38
D
156 159Right-handed 310
Helix 39
39
D
160 184Right-handed alpha
Helix 40
40
D
203 216Right-handed alpha
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There are 9 sheets in PDB entry 4PZL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-7 -4first strand
Strand 2
B
-6 -4anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
80 84parallel
Strand 3
A
1 7parallel
Strand 4
A
105 110parallel
Strand 5
A
194 199parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
132 134anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
80 84parallel
Strand 3
B
1 6parallel
Strand 4
B
105 110parallel
Strand 5
B
194 199parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
132 134anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 30first strand
Strand 2
C
80 84parallel
Strand 3
C
1 7parallel
Strand 4
C
105 110parallel
Strand 5
C
194 199parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 125first strand
Strand 2
C
132 134anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 30first strand
Strand 2
D
80 84parallel
Strand 3
D
1 7parallel
Strand 4
D
105 110parallel
Strand 5
D
194 199parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 125first strand
Strand 2
D
132 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il