Analysis of interatomic Contacts of Structural Units in PDB entry:
4PZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PZP entry

There is 1 chain in PDB entry 4PZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLU 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4PZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
29 47Right-handed alpha
Helix 3
3
A
62 74Right-handed alpha
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
119 130Right-handed alpha
Helix 6
6
A
136 140Right-handed 310
Helix 7
7
A
166 180Right-handed alpha
Helix 8
8
A
196 198Right-handed 310
Helix 9
9
A
199 209Right-handed alpha
Helix 10
10
A
217 222Right-handed alpha
Helix 11
11
A
223 235Right-handed alpha
Helix 12
12
A
242 251Right-handed alpha
Helix 13
13
A
274 285Right-handed alpha
Helix 14
14
A
296 300Right-handed 310
Helix 15
15
A
309 316Right-handed alpha
Helix 16
16
A
415 421Right-handed alpha
Helix 17
17
A
454 467Right-handed alpha
Helix 18
18
A
471 475Right-handed 310
Helix 19
19
A
494 501Right-handed alpha
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There are 6 sheets in PDB entry 4PZP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
18 22anti-parallel
Strand 3
A
212 215parallel
Strand 4
A
187 190parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
54 58parallel
Strand 3
A
101 104parallel
Strand 4
A
116 118parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
162 165anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
265 268parallel
Strand 3
A
289 294parallel
Strand 4
A
304 307anti-parallel
Strand 5
A
322 324anti-parallel
Strand 6
A
391 394anti-parallel
Strand 7
A
376 388anti-parallel
Strand 8
A
346 351anti-parallel
Strand 9
A
329 333anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
265 268parallel
Strand 3
A
289 294parallel
Strand 4
A
304 307anti-parallel
Strand 5
A
322 324anti-parallel
Strand 6
A
391 394anti-parallel
Strand 7
A
376 388anti-parallel
Strand 8
A
370 373anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 430first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
478 481parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il