Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q05 entry

There are 2 chains in PDB entry 4Q05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14ARG 340
B
 GLU 14ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4Q05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 40Right-handed alpha
Helix 2
2
A
46 52Right-handed alpha
Helix 3
3
A
56 69Right-handed alpha
Helix 4
4
A
70 83Right-handed alpha
Helix 5
5
A
105 109Right-handed 310
Helix 6
6
A
125 129Right-handed 310
Helix 7
7
A
130 141Right-handed alpha
Helix 8
8
A
158 175Right-handed alpha
Helix 9
9
A
176 178Right-handed 310
Helix 10
10
A
186 202Right-handed alpha
Helix 11
11
A
223 229Right-handed alpha
Helix 12
12
A
241 252Right-handed alpha
Helix 13
13
A
262 266Right-handed 310
Helix 14
14
A
284 298Right-handed alpha
Helix 15
15
A
313 317Right-handed 310
Helix 16
16
A
321 339Right-handed alpha
Helix 17
17
B
31 40Right-handed alpha
Helix 18
18
B
46 52Right-handed alpha
Helix 19
19
B
56 69Right-handed alpha
Helix 20
20
B
70 83Right-handed alpha
Helix 21
21
B
105 109Right-handed 310
Helix 22
22
B
125 128Right-handed 310
Helix 23
23
B
129 141Right-handed alpha
Helix 24
24
B
158 175Right-handed alpha
Helix 25
25
B
176 178Right-handed 310
Helix 26
26
B
186 202Right-handed alpha
Helix 27
27
B
223 229Right-handed alpha
Helix 28
28
B
241 252Right-handed alpha
Helix 29
29
B
262 266Right-handed 310
Helix 30
30
B
284 298Right-handed alpha
Helix 31
31
B
313 317Right-handed 310
Helix 32
32
B
321 339Right-handed alpha
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There are 4 sheets in PDB entry 4Q05. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
B
22 24anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
B
17 19anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 91first strand
Strand 2
A
94 100anti-parallel
Strand 3
A
144 148anti-parallel
Strand 4
A
112 116parallel
Strand 5
A
180 185parallel
Strand 6
A
209 215parallel
Strand 7
A
274 279parallel
Strand 8
A
302 307parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 91first strand
Strand 2
B
94 100anti-parallel
Strand 3
B
144 148anti-parallel
Strand 4
B
112 116parallel
Strand 5
B
180 185parallel
Strand 6
B
209 215parallel
Strand 7
B
274 279parallel
Strand 8
B
302 307parallel
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