Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q0C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Q0C entry

There are 4 chains in PDB entry 4Q0C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 33	GLU 545
B	SER 33	GLU 545
C	SER 33	GLU 545
D	SER 33	GLU 545

There are 84 helices in PDB entry 4Q0C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	53	63	Right-handed alpha
Helix 2	2	A	87	100	Right-handed alpha
Helix 3	3	A	111	121	Right-handed alpha
Helix 4	4	A	163	168	Right-handed alpha
Helix 5	5	A	180	188	Right-handed alpha
Helix 6	6	A	198	208	Right-handed alpha
Helix 7	7	A	218	229	Right-handed alpha
Helix 8	8	A	254	268	Right-handed alpha
Helix 9	9	A	269	280	Right-handed alpha
Helix 10	10	A	282	286	Right-handed 310
Helix 11	11	A	296	306	Right-handed alpha
Helix 12	12	A	331	345	Right-handed alpha
Helix 13	13	A	355	365	Right-handed alpha
Helix 14	14	A	379	382	Right-handed 310
Helix 15	15	A	408	412	Right-handed 310
Helix 16	16	A	424	433	Right-handed alpha
Helix 17	17	A	443	454	Right-handed alpha
Helix 18	18	A	463	473	Right-handed alpha
Helix 19	19	A	499	513	Right-handed alpha
Helix 20	20	A	514	527	Right-handed alpha
Helix 21	21	A	531	545	Right-handed alpha
Helix 22	22	B	52	63	Right-handed alpha
Helix 23	23	B	87	100	Right-handed alpha
Helix 24	24	B	111	121	Right-handed alpha
Helix 25	25	B	131	135	Right-handed 310
Helix 26	26	B	180	188	Right-handed alpha
Helix 27	27	B	198	208	Right-handed alpha
Helix 28	28	B	218	229	Right-handed alpha
Helix 29	29	B	254	268	Right-handed alpha
Helix 30	30	B	269	280	Right-handed alpha
Helix 31	31	B	282	286	Right-handed 310
Helix 32	32	B	296	306	Right-handed alpha
Helix 33	33	B	331	345	Right-handed alpha
Helix 34	34	B	355	366	Right-handed alpha
Helix 35	35	B	379	382	Right-handed 310
Helix 36	36	B	408	412	Right-handed 310
Helix 37	37	B	424	433	Right-handed alpha
Helix 38	38	B	443	454	Right-handed alpha
Helix 39	39	B	463	473	Right-handed alpha
Helix 40	40	B	499	513	Right-handed alpha
Helix 41	41	B	514	527	Right-handed alpha
Helix 42	42	B	531	545	Right-handed alpha
Helix 43	43	C	53	63	Right-handed alpha
Helix 44	44	C	87	100	Right-handed alpha
Helix 45	45	C	111	121	Right-handed alpha
Helix 46	46	C	131	135	Right-handed 310
Helix 47	47	C	180	188	Right-handed alpha
Helix 48	48	C	198	208	Right-handed alpha
Helix 49	49	C	218	229	Right-handed alpha
Helix 50	50	C	254	268	Right-handed alpha
Helix 51	51	C	269	280	Right-handed alpha
Helix 52	52	C	282	284	Right-handed 310
Helix 53	53	C	285	290	Right-handed alpha
Helix 54	54	C	296	306	Right-handed alpha
Helix 55	55	C	331	345	Right-handed alpha
Helix 56	56	C	355	365	Right-handed alpha
Helix 57	57	C	379	382	Right-handed 310
Helix 58	58	C	408	412	Right-handed 310
Helix 59	59	C	424	433	Right-handed alpha
Helix 60	60	C	443	454	Right-handed alpha
Helix 61	61	C	463	473	Right-handed alpha
Helix 62	62	C	499	513	Right-handed alpha
Helix 63	63	C	514	527	Right-handed alpha
Helix 64	64	C	531	545	Right-handed alpha
Helix 65	65	D	52	63	Right-handed alpha
Helix 66	66	D	87	100	Right-handed alpha
Helix 67	67	D	111	122	Right-handed alpha
Helix 68	68	D	180	188	Right-handed alpha
Helix 69	69	D	198	208	Right-handed alpha
Helix 70	70	D	218	229	Right-handed alpha
Helix 71	71	D	254	268	Right-handed alpha
Helix 72	72	D	269	280	Right-handed alpha
Helix 73	73	D	282	286	Right-handed 310
Helix 74	74	D	296	306	Right-handed alpha
Helix 75	75	D	331	345	Right-handed alpha
Helix 76	76	D	355	365	Right-handed alpha
Helix 77	77	D	379	382	Right-handed 310
Helix 78	78	D	408	412	Right-handed 310
Helix 79	79	D	424	433	Right-handed alpha
Helix 80	80	D	443	454	Right-handed alpha
Helix 81	81	D	463	473	Right-handed alpha
Helix 82	82	D	499	513	Right-handed alpha
Helix 83	83	D	514	527	Right-handed alpha
Helix 84	84	D	531	545	Right-handed alpha

There are 24 sheets in PDB entry 4Q0C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	84	86	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	103	109	anti-parallel
Strand 5	A	64	70	parallel
Strand 6	A	126	130	parallel
Strand 7	A	247	251	anti-parallel
Strand 8	A	140	142	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	171	175	parallel
Strand 3	A	213	217	parallel
Strand 4	A	151	156	anti-parallel
Strand 5	A	233	238	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	353	first strand
Strand 2	A	308	314	parallel
Strand 3	A	370	375	parallel
Strand 4	A	489	496	anti-parallel
Strand 5	A	384	386	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	353	first strand
Strand 2	A	308	314	parallel
Strand 3	A	370	375	parallel
Strand 4	A	489	496	anti-parallel
Strand 5	A	391	393	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	321	323	anti-parallel
Strand 3	A	329	330	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	441	first strand
Strand 2	A	416	420	parallel
Strand 3	A	458	462	parallel
Strand 4	A	395	400	anti-parallel
Strand 5	A	478	483	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	84	86	anti-parallel
Strand 3	B	34	38	parallel
Strand 4	B	103	109	anti-parallel
Strand 5	B	64	70	parallel
Strand 6	B	126	130	parallel
Strand 7	B	247	251	anti-parallel
Strand 8	B	140	142	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	171	175	parallel
Strand 3	B	213	217	parallel
Strand 4	B	151	156	anti-parallel
Strand 5	B	233	238	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	353	first strand
Strand 2	B	308	314	parallel
Strand 3	B	370	375	parallel
Strand 4	B	489	496	anti-parallel
Strand 5	B	384	386	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	353	first strand
Strand 2	B	308	314	parallel
Strand 3	B	370	375	parallel
Strand 4	B	489	496	anti-parallel
Strand 5	B	391	393	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	321	323	anti-parallel
Strand 3	B	329	330	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	441	first strand
Strand 2	B	416	420	parallel
Strand 3	B	458	462	parallel
Strand 4	B	395	400	anti-parallel
Strand 5	B	478	483	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	84	86	anti-parallel
Strand 3	C	34	38	parallel
Strand 4	C	103	109	anti-parallel
Strand 5	C	64	70	parallel
Strand 6	C	126	130	parallel
Strand 7	C	247	251	anti-parallel
Strand 8	C	140	142	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	196	first strand
Strand 2	C	171	175	parallel
Strand 3	C	213	217	parallel
Strand 4	C	151	156	anti-parallel
Strand 5	C	233	238	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	353	first strand
Strand 2	C	308	314	parallel
Strand 3	C	370	375	parallel
Strand 4	C	489	496	anti-parallel
Strand 5	C	384	386	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	353	first strand
Strand 2	C	308	314	parallel
Strand 3	C	370	375	parallel
Strand 4	C	489	496	anti-parallel
Strand 5	C	391	393	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	323	first strand
Strand 2	C	329	330	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	441	first strand
Strand 2	C	416	420	parallel
Strand 3	C	458	462	parallel
Strand 4	C	395	400	anti-parallel
Strand 5	C	478	483	anti-parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	84	86	anti-parallel
Strand 3	D	34	38	parallel
Strand 4	D	103	109	anti-parallel
Strand 5	D	64	70	parallel
Strand 6	D	126	130	parallel
Strand 7	D	247	251	anti-parallel
Strand 8	D	140	142	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	196	first strand
Strand 2	D	171	175	parallel
Strand 3	D	213	217	parallel
Strand 4	D	151	156	anti-parallel
Strand 5	D	233	238	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	353	first strand
Strand 2	D	308	314	parallel
Strand 3	D	370	375	parallel
Strand 4	D	489	496	anti-parallel
Strand 5	D	384	386	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	353	first strand
Strand 2	D	308	314	parallel
Strand 3	D	370	375	parallel
Strand 4	D	489	496	anti-parallel
Strand 5	D	391	393	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	321	323	anti-parallel
Strand 3	D	329	330	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	437	441	first strand
Strand 2	D	416	420	parallel
Strand 3	D	458	462	parallel
Strand 4	D	395	400	anti-parallel
Strand 5	D	478	483	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Q0C

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q0C