Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q0D entry

There are 5 chains in PDB entry 4Q0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLU 3VAL 521
A
 GLU 3VAL 521
B
 GLU 3VAL 521
C
 GLU 3VAL 521
D
 GLU 3VAL 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 4Q0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
29 41Right-handed alpha
Helix 2
2
E
56 62Right-handed alpha
Helix 3
3
E
94 97Right-handed 310
Helix 4
4
E
98 103Right-handed alpha
Helix 5
5
E
115 125Right-handed alpha
Helix 6
6
E
194 207Right-handed alpha
Helix 7
7
E
211 216Right-handed alpha
Helix 8
8
E
220 224Right-handed 310
Helix 9
9
E
237 251Right-handed alpha
Helix 10
10
E
287 300Right-handed alpha
Helix 11
11
E
305 311Right-handed alpha
Helix 12
12
E
321 328Right-handed alpha
Helix 13
13
E
343 348Right-handed alpha
Helix 14
14
E
366 378Right-handed alpha
Helix 15
15
E
393 397Right-handed 310
Helix 16
16
E
429 449Right-handed alpha
Helix 17
17
E
469 477Right-handed alpha
Helix 18
18
E
495 499Right-handed 310
Helix 19
19
E
500 502Right-handed 310
Helix 20
20
A
29 41Right-handed alpha
Helix 21
21
A
56 62Right-handed alpha
Helix 22
22
A
94 97Right-handed 310
Helix 23
23
A
98 103Right-handed alpha
Helix 24
24
A
115 125Right-handed alpha
Helix 25
25
A
194 207Right-handed alpha
Helix 26
26
A
211 216Right-handed alpha
Helix 27
27
A
220 224Right-handed 310
Helix 28
28
A
237 251Right-handed alpha
Helix 29
29
A
287 300Right-handed alpha
Helix 30
30
A
305 311Right-handed alpha
Helix 31
31
A
321 328Right-handed alpha
Helix 32
32
A
343 348Right-handed alpha
Helix 33
33
A
366 378Right-handed alpha
Helix 34
34
A
393 397Right-handed 310
Helix 35
35
A
429 450Right-handed alpha
Helix 36
36
A
469 477Right-handed alpha
Helix 37
37
A
495 499Right-handed 310
Helix 38
38
A
500 502Right-handed 310
Helix 39
39
B
29 41Right-handed alpha
Helix 40
40
B
56 62Right-handed alpha
Helix 41
41
B
94 97Right-handed 310
Helix 42
42
B
98 103Right-handed alpha
Helix 43
43
B
115 125Right-handed alpha
Helix 44
44
B
194 207Right-handed alpha
Helix 45
45
B
211 216Right-handed alpha
Helix 46
46
B
220 224Right-handed 310
Helix 47
47
B
237 251Right-handed alpha
Helix 48
48
B
287 300Right-handed alpha
Helix 49
49
B
305 311Right-handed alpha
Helix 50
50
B
321 328Right-handed alpha
Helix 51
51
B
343 348Right-handed alpha
Helix 52
52
B
366 378Right-handed alpha
Helix 53
53
B
393 397Right-handed 310
Helix 54
54
B
429 450Right-handed alpha
Helix 55
55
B
469 477Right-handed alpha
Helix 56
56
B
495 499Right-handed 310
Helix 57
57
B
500 502Right-handed 310
Helix 58
58
C
29 41Right-handed alpha
Helix 59
59
C
56 62Right-handed alpha
Helix 60
60
C
94 97Right-handed 310
Helix 61
61
C
98 103Right-handed alpha
Helix 62
62
C
115 125Right-handed alpha
Helix 63
63
C
194 207Right-handed alpha
Helix 64
64
C
211 216Right-handed alpha
Helix 65
65
C
220 224Right-handed 310
Helix 66
66
C
237 251Right-handed alpha
Helix 67
67
C
287 300Right-handed alpha
Helix 68
68
C
305 311Right-handed alpha
Helix 69
69
C
321 328Right-handed alpha
Helix 70
70
C
343 348Right-handed alpha
Helix 71
71
C
366 378Right-handed alpha
Helix 72
72
C
393 397Right-handed 310
Helix 73
73
C
429 450Right-handed alpha
Helix 74
74
C
469 477Right-handed alpha
Helix 75
75
C
495 499Right-handed 310
Helix 76
76
C
500 502Right-handed 310
Helix 77
77
D
29 41Right-handed alpha
Helix 78
78
D
56 62Right-handed alpha
Helix 79
79
D
94 97Right-handed 310
Helix 80
80
D
98 103Right-handed alpha
Helix 81
81
D
115 125Right-handed alpha
Helix 82
82
D
194 207Right-handed alpha
Helix 83
83
D
211 216Right-handed alpha
Helix 84
84
D
220 224Right-handed 310
Helix 85
85
D
237 251Right-handed alpha
Helix 86
86
D
287 300Right-handed alpha
Helix 87
87
D
305 311Right-handed alpha
Helix 88
88
D
321 328Right-handed alpha
Helix 89
89
D
343 348Right-handed alpha
Helix 90
90
D
366 378Right-handed alpha
Helix 91
91
D
393 397Right-handed 310
Helix 92
92
D
429 450Right-handed alpha
Helix 93
93
D
469 477Right-handed alpha
Helix 94
94
D
495 499Right-handed 310
Helix 95
95
D
500 502Right-handed 310
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There are 25 sheets in PDB entry 4Q0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 91first strand
Strand 2
E
70 75parallel
Strand 3
E
49 55parallel
Strand 4
E
107 114parallel
Strand 5
E
6 13parallel
Strand 6
E
130 136parallel
Strand 7
E
173 177anti-parallel
Strand 8
E
154 159anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 20first strand
Strand 2
E
145 146anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 165first strand
Strand 2
E
168 170anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
252 254first strand
Strand 2
E
262 273anti-parallel
Strand 3
E
452 466anti-parallel
Strand 4
E
415 426parallel
Strand 5
E
403 410anti-parallel
Strand 6
E
385 387anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
486 489first strand
Strand 2
E
504 507anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
70 75parallel
Strand 3
A
49 55parallel
Strand 4
A
107 114parallel
Strand 5
A
6 13parallel
Strand 6
A
130 136parallel
Strand 7
A
173 177anti-parallel
Strand 8
A
154 159anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
145 146anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
168 170anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
262 273anti-parallel
Strand 3
A
452 466anti-parallel
Strand 4
A
415 426parallel
Strand 5
A
403 410anti-parallel
Strand 6
A
385 387anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 489first strand
Strand 2
A
504 507anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
70 75parallel
Strand 3
B
49 55parallel
Strand 4
B
107 114parallel
Strand 5
B
6 13parallel
Strand 6
B
130 136parallel
Strand 7
B
173 177anti-parallel
Strand 8
B
154 159anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
145 146anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
168 170anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 254first strand
Strand 2
B
262 273anti-parallel
Strand 3
B
452 466anti-parallel
Strand 4
B
415 426parallel
Strand 5
B
403 410anti-parallel
Strand 6
B
385 387anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
504 507anti-parallel
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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 91first strand
Strand 2
C
70 75parallel
Strand 3
C
49 55parallel
Strand 4
C
107 114parallel
Strand 5
C
6 13parallel
Strand 6
C
130 136parallel
Strand 7
C
173 177anti-parallel
Strand 8
C
154 159anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
145 146anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 165first strand
Strand 2
C
168 170anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 254first strand
Strand 2
C
262 273anti-parallel
Strand 3
C
452 466anti-parallel
Strand 4
C
415 426parallel
Strand 5
C
403 410anti-parallel
Strand 6
C
385 387anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
486 489first strand
Strand 2
C
504 507anti-parallel
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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 91first strand
Strand 2
D
70 75parallel
Strand 3
D
49 55parallel
Strand 4
D
107 114parallel
Strand 5
D
6 13parallel
Strand 6
D
130 136parallel
Strand 7
D
173 177anti-parallel
Strand 8
D
154 159anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 20first strand
Strand 2
D
145 146anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
163 165first strand
Strand 2
D
168 170anti-parallel
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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 254first strand
Strand 2
D
262 273anti-parallel
Strand 3
D
452 466anti-parallel
Strand 4
D
415 426parallel
Strand 5
D
403 410anti-parallel
Strand 6
D
385 387anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
486 489first strand
Strand 2
D
504 507anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il