Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q0J entry

There is 1 chain in PDB entry 4Q0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4Q0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
23 27Right-handed 310
Helix 3
3
A
57 63Right-handed alpha
Helix 4
4
A
65 70Right-handed alpha
Helix 5
5
A
73 78Right-handed alpha
Helix 6
6
A
81 89Right-handed alpha
Helix 7
7
A
138 149Right-handed alpha
Helix 8
8
A
152 169Right-handed alpha
Helix 9
9
A
204 208Right-handed 310
Helix 10
10
A
209 219Right-handed alpha
Helix 11
11
A
257 268Right-handed alpha
Helix 12
12
A
298 343Right-handed alpha
Helix 13
13
A
347 353Right-handed alpha
Helix 14
14
A
358 363Right-handed alpha
Helix 15
15
A
384 398Right-handed alpha
Helix 16
16
A
407 412Right-handed alpha
Helix 17
17
A
413 419Right-handed 310
Helix 18
18
A
484 502Right-handed alpha
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There are 4 sheets in PDB entry 4Q0J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
51 55anti-parallel
Strand 4
A
40 45anti-parallel
Strand 5
A
121 128anti-parallel
Strand 6
A
110 118anti-parallel
Strand 7
A
98 104anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
184 191anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
282 291anti-parallel
Strand 5
A
271 279anti-parallel
Strand 6
A
221 224anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 380first strand
Strand 2
A
367 372anti-parallel
Strand 3
A
437 442anti-parallel
Strand 4
A
424 429anti-parallel
Strand 5
A
402 405anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 452first strand
Strand 2
A
471 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il