Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q16 entry

There are 4 chains in PDB entry 4Q16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8PRO 281
B
 PRO 7PRO 281
C
 LEU 11PRO 281
D
 LEU 8GLY 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 4Q16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
26 44Right-handed alpha
Helix 3
3
A
57 77Right-handed alpha
Helix 4
4
A
96 107Right-handed alpha
Helix 5
5
A
116 132Right-handed alpha
Helix 6
6
A
136 160Right-handed alpha
Helix 7
7
A
168 175Right-handed alpha
Helix 8
8
A
194 205Right-handed alpha
Helix 9
9
A
208 212Right-handed 310
Helix 10
10
A
228 234Right-handed alpha
Helix 11
11
A
236 245Right-handed alpha
Helix 12
12
A
250 264Right-handed alpha
Helix 13
13
A
265 268Right-handed 310
Helix 14
14
B
9 19Right-handed alpha
Helix 15
15
B
26 44Right-handed alpha
Helix 16
16
B
57 77Right-handed alpha
Helix 17
17
B
96 107Right-handed alpha
Helix 18
18
B
116 132Right-handed alpha
Helix 19
19
B
136 159Right-handed alpha
Helix 20
20
B
168 175Right-handed alpha
Helix 21
21
B
194 205Right-handed alpha
Helix 22
22
B
208 212Right-handed 310
Helix 23
23
B
227 234Right-handed alpha
Helix 24
24
B
236 245Right-handed alpha
Helix 25
25
B
251 263Right-handed alpha
Helix 26
26
C
12 17Right-handed alpha
Helix 27
27
C
26 44Right-handed alpha
Helix 28
28
C
57 77Right-handed alpha
Helix 29
29
C
97 107Right-handed alpha
Helix 30
30
C
116 132Right-handed alpha
Helix 31
31
C
136 160Right-handed alpha
Helix 32
32
C
168 175Right-handed alpha
Helix 33
33
C
194 205Right-handed alpha
Helix 34
34
C
208 212Right-handed 310
Helix 35
35
C
236 245Right-handed alpha
Helix 36
36
C
250 263Right-handed alpha
Helix 37
37
C
264 269Right-handed 310
Helix 38
38
D
10 19Right-handed alpha
Helix 39
39
D
28 44Right-handed alpha
Helix 40
40
D
57 78Right-handed alpha
Helix 41
41
D
96 107Right-handed alpha
Helix 42
42
D
116 132Right-handed alpha
Helix 43
43
D
136 160Right-handed alpha
Helix 44
44
D
168 175Right-handed alpha
Helix 45
45
D
194 205Right-handed alpha
Helix 46
46
D
228 234Right-handed alpha
Helix 47
47
D
236 245Right-handed alpha
Helix 48
48
D
250 264Right-handed alpha
Helix 49
49
D
265 269Right-handed 310
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There are 4 sheets in PDB entry 4Q16. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
82 87parallel
Strand 3
A
49 53parallel
Strand 4
A
162 163parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
82 87parallel
Strand 3
B
49 53parallel
Strand 4
B
162 163parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 113first strand
Strand 2
C
82 87parallel
Strand 3
C
49 53parallel
Strand 4
C
162 163parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 113first strand
Strand 2
D
82 87parallel
Strand 3
D
49 54parallel
Strand 4
D
162 163parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il