Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q33

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Q33 entry

There are 4 chains in PDB entry 4Q33 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 481
B	ALA 2	SER 481
C	ARG 3	VAL 482
D	ALA 2	GLN 458

There are105 helices in PDB entry 4Q33. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	24	28	Right-handed 310
Helix 2	2	A	54	64	Right-handed alpha
Helix 3	3	A	75	88	Right-handed alpha
Helix 4	4	A	227	238	Right-handed alpha
Helix 5	5	A	252	266	Right-handed alpha
Helix 6	6	A	278	289	Right-handed alpha
Helix 7	7	A	304	309	Right-handed alpha
Helix 8	8	A	314	330	Right-handed alpha
Helix 9	9	A	341	351	Right-handed alpha
Helix 10	10	A	388	393	Right-handed alpha
Helix 11	11	A	422	441	Right-handed alpha
Helix 12	12	A	445	452	Right-handed alpha
Helix 13	13	A	459	467	Right-handed alpha
Helix 14	14	B	10	12	Right-handed 310
Helix 15	15	B	54	64	Right-handed alpha
Helix 16	16	B	75	89	Right-handed alpha
Helix 17	17	B	227	238	Right-handed alpha
Helix 18	18	B	252	266	Right-handed alpha
Helix 19	19	B	278	289	Right-handed alpha
Helix 20	20	B	304	309	Right-handed alpha
Helix 21	21	B	314	330	Right-handed alpha
Helix 22	22	B	341	351	Right-handed alpha
Helix 23	23	B	359	364	Right-handed alpha
Helix 24	24	B	422	441	Right-handed alpha
Helix 25	25	B	445	452	Right-handed alpha
Helix 26	26	B	459	467	Right-handed alpha
Helix 27	27	C	54	65	Right-handed alpha
Helix 28	28	C	75	88	Right-handed alpha
Helix 29	29	C	227	238	Right-handed alpha
Helix 30	30	C	252	266	Right-handed alpha
Helix 31	31	C	278	287	Right-handed alpha
Helix 32	32	C	304	309	Right-handed alpha
Helix 33	33	C	314	330	Right-handed alpha
Helix 34	34	C	341	351	Right-handed alpha
Helix 35	35	C	359	364	Right-handed alpha
Helix 36	36	C	422	441	Right-handed alpha
Helix 37	37	C	445	453	Right-handed alpha
Helix 38	38	C	459	467	Right-handed alpha
Helix 39	39	D	10	12	Right-handed 310
Helix 40	40	D	24	28	Right-handed 310
Helix 41	41	D	54	65	Right-handed alpha
Helix 42	42	D	75	88	Right-handed alpha
Helix 43	43	D	227	238	Right-handed alpha
Helix 44	44	D	252	266	Right-handed alpha
Helix 45	45	D	278	288	Right-handed alpha
Helix 46	46	D	304	309	Right-handed alpha
Helix 47	47	D	314	330	Right-handed alpha
Helix 48	48	D	341	352	Right-handed alpha
Helix 49	49	D	388	393	Right-handed alpha
Helix 50	50	D	422	441	Right-handed alpha
Helix 51	51	D	445	452	Right-handed alpha
Helix 52	52	D	459	467	Right-handed alpha
Helix 53	53	E	10	12	Right-handed 310
Helix 54	54	E	24	28	Right-handed 310
Helix 55	55	E	54	65	Right-handed alpha
Helix 56	56	E	75	89	Right-handed alpha
Helix 57	57	E	227	238	Right-handed alpha
Helix 58	58	E	252	266	Right-handed alpha
Helix 59	59	E	278	288	Right-handed alpha
Helix 60	60	E	304	309	Right-handed alpha
Helix 61	61	E	314	330	Right-handed alpha
Helix 62	62	E	341	352	Right-handed alpha
Helix 63	63	E	388	393	Right-handed alpha
Helix 64	64	E	422	441	Right-handed alpha
Helix 65	65	E	445	452	Right-handed alpha
Helix 66	66	E	459	467	Right-handed alpha
Helix 67	67	F	54	64	Right-handed alpha
Helix 68	68	F	75	89	Right-handed alpha
Helix 69	69	F	227	238	Right-handed alpha
Helix 70	70	F	252	266	Right-handed alpha
Helix 71	71	F	278	289	Right-handed alpha
Helix 72	72	F	304	309	Right-handed alpha
Helix 73	73	F	314	329	Right-handed alpha
Helix 74	74	F	341	352	Right-handed alpha
Helix 75	75	F	388	394	Right-handed alpha
Helix 76	76	F	422	441	Right-handed alpha
Helix 77	77	F	445	452	Right-handed alpha
Helix 78	78	F	459	467	Right-handed alpha
Helix 79	79	G	10	12	Right-handed 310
Helix 80	80	G	24	28	Right-handed 310
Helix 81	81	G	54	65	Right-handed alpha
Helix 82	82	G	75	88	Right-handed alpha
Helix 83	83	G	227	238	Right-handed alpha
Helix 84	84	G	252	266	Right-handed alpha
Helix 85	85	G	278	289	Right-handed alpha
Helix 86	86	G	304	309	Right-handed alpha
Helix 87	87	G	314	328	Right-handed alpha
Helix 88	88	G	341	351	Right-handed alpha
Helix 89	89	G	422	441	Right-handed alpha
Helix 90	90	G	445	453	Right-handed alpha
Helix 91	91	G	459	467	Right-handed alpha
Helix 92	92	H	10	12	Right-handed 310
Helix 93	93	H	24	28	Right-handed 310
Helix 94	94	H	54	64	Right-handed alpha
Helix 95	95	H	75	88	Right-handed alpha
Helix 96	96	H	227	238	Right-handed alpha
Helix 97	97	H	252	266	Right-handed alpha
Helix 98	98	H	278	289	Right-handed alpha
Helix 99	99	H	304	309	Right-handed alpha
Helix 100	100	H	314	330	Right-handed alpha
Helix 101	101	H	341	351	Right-handed alpha
Helix 102	102	H	359	364	Right-handed alpha
Helix 103	103	H	422	441	Right-handed alpha
Helix 104	104	H	445	452	Right-handed alpha
Helix 105	105	H	459	467	Right-handed alpha

There are 31 sheets in PDB entry 4Q33. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	C	454	458	parallel
Strand 3	C	14	16	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	454	458	anti-parallel
Strand 3	B	3	8	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	39	40	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	67	70	parallel
Strand 3	A	219	222	parallel
Strand 4	A	242	246	parallel
Strand 5	A	270	276	parallel
Strand 6	A	292	295	parallel
Strand 7	A	333	336	parallel
Strand 8	A	355	358	parallel
Strand 9	A	44	46	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	378	384	anti-parallel
Strand 3	A	414	418	anti-parallel
Strand 4	C	472	475	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	B	414	418	anti-parallel
Strand 3	B	378	384	anti-parallel
Strand 4	B	372	375	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	454	457	anti-parallel
Strand 3	D	3	7	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	67	70	parallel
Strand 3	B	219	222	parallel
Strand 4	B	242	246	parallel
Strand 5	B	270	276	parallel
Strand 6	B	292	295	parallel
Strand 7	B	333	336	parallel
Strand 8	B	355	358	parallel
Strand 9	B	44	46	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	473	first strand
Strand 2	D	414	418	anti-parallel
Strand 3	D	379	384	anti-parallel
Strand 4	D	373	374	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	D	455	458	parallel
Strand 3	D	14	16	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	39	40	anti-parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	67	70	parallel
Strand 3	C	218	222	parallel
Strand 4	C	242	246	parallel
Strand 5	C	270	276	parallel
Strand 6	C	292	295	parallel
Strand 7	C	333	336	parallel
Strand 8	C	355	358	parallel
Strand 9	C	44	46	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	375	first strand
Strand 2	C	378	384	anti-parallel
Strand 3	C	414	418	anti-parallel
Strand 4	D	472	475	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	39	40	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	44	46	parallel
Strand 3	D	355	358	parallel
Strand 4	D	333	336	parallel
Strand 5	D	292	295	parallel
Strand 6	D	271	276	parallel
Strand 7	D	242	246	parallel
Strand 8	D	219	222	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	8	first strand
Strand 2	G	454	458	parallel
Strand 3	G	14	16	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	454	458	anti-parallel
Strand 3	F	3	8	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	39	40	anti-parallel

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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	46	first strand
Strand 2	E	67	70	parallel
Strand 3	E	219	221	parallel
Strand 4	E	242	246	parallel
Strand 5	E	270	276	parallel
Strand 6	E	292	295	parallel
Strand 7	E	333	336	parallel
Strand 8	E	355	358	parallel
Strand 9	E	44	46	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	375	first strand
Strand 2	E	378	384	anti-parallel
Strand 3	E	414	418	anti-parallel
Strand 4	G	472	475	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	472	473	first strand
Strand 2	F	414	418	anti-parallel
Strand 3	F	378	384	anti-parallel
Strand 4	F	373	375	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	16	first strand
Strand 2	F	454	458	anti-parallel
Strand 3	H	3	8	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	39	40	anti-parallel

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There are 9 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	46	first strand
Strand 2	F	67	70	parallel
Strand 3	F	218	222	parallel
Strand 4	F	242	246	parallel
Strand 5	F	270	276	parallel
Strand 6	F	292	295	parallel
Strand 7	F	333	336	parallel
Strand 8	F	355	358	parallel
Strand 9	F	44	46	parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	472	473	first strand
Strand 2	H	414	418	anti-parallel
Strand 3	H	378	384	anti-parallel
Strand 4	H	372	375	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	H	454	457	parallel
Strand 3	H	14	16	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	33	first strand
Strand 2	G	39	40	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	46	first strand
Strand 2	G	67	70	parallel
Strand 3	G	219	222	parallel
Strand 4	G	242	246	parallel
Strand 5	G	270	276	parallel
Strand 6	G	292	295	parallel
Strand 7	G	333	336	parallel
Strand 8	G	355	358	parallel
Strand 9	G	44	46	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	373	375	first strand
Strand 2	G	378	384	anti-parallel
Strand 3	G	414	418	anti-parallel
Strand 4	H	472	475	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	33	first strand
Strand 2	H	39	40	anti-parallel

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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	46	first strand
Strand 2	H	67	70	parallel
Strand 3	H	219	221	parallel
Strand 4	H	242	246	parallel
Strand 5	H	270	276	parallel
Strand 6	H	292	295	parallel
Strand 7	H	333	336	parallel
Strand 8	H	355	358	parallel
Strand 9	H	44	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Q33

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q33