Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q34 entry

There is 1 chain in PDB entry 4Q34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21ASP 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 4Q34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 81Right-handed 310
Helix 2
2
A
89 97Right-handed alpha
Helix 3
3
A
109 113Right-handed 310
Helix 4
4
A
126 134Right-handed alpha
Helix 5
5
A
151 161Right-handed alpha
Helix 6
6
A
170 186Right-handed alpha
Helix 7
7
A
195 204Right-handed alpha
Helix 8
8
A
205 207Right-handed 310
Helix 9
9
A
230 234Right-handed 310
Helix 10
10
A
248 253Right-handed alpha
Helix 11
11
A
254 257Right-handed 310
Helix 12
12
A
274 296Right-handed alpha
Helix 13
13
A
307 310Right-handed 310
Helix 14
14
A
323 338Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4Q34. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 34first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
101 105anti-parallel
Strand 4
A
67 70parallel
Strand 5
A
188 193parallel
Strand 6
A
210 216parallel
Strand 7
A
260 264parallel
Strand 8
A
301 305parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
46 49anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
141 142anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
244 247parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il