Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q35 entry

There are 2 chains in PDB entry 4Q35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25LEU 784
B
 GLY 1000SER 1149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4Q35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 33Right-handed alpha
Helix 2
2
A
266 268Right-handed 310
Helix 3
3
A
295 302Right-handed alpha
Helix 4
4
A
338 343Right-handed alpha
Helix 5
5
A
463 469Right-handed alpha
Helix 6
6
A
536 541Right-handed alpha
Helix 7
7
A
631 633Right-handed 310
Helix 8
8
A
660 668Right-handed alpha
Helix 9
9
A
669 675Right-handed alpha
Helix 10
10
A
768 774Right-handed alpha
Helix 11
11
B
1010 1013Right-handed 310
Helix 12
12
B
1025 1038Right-handed alpha
Helix 13
13
B
1109 1111Right-handed 310
Helix 14
14
B
1112 1138Right-handed alpha
Helix 15
15
B
1138 1149Right-handed alpha
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There are 6 sheets in PDB entry 4Q35. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
73 77anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
110 113anti-parallel
Strand 5
A
117 121anti-parallel
Strand 6
A
133 142anti-parallel
Strand 7
A
123 127anti-parallel
Strand 8
A
103 106anti-parallel
Strand 9
A
87 90anti-parallel
Strand 10
A
66 70anti-parallel
Strand 11
A
58 60anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
73 77anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
110 113anti-parallel
Strand 5
A
117 121anti-parallel
Strand 6
A
133 142anti-parallel
Strand 7
A
148 157anti-parallel
Strand 8
A
162 170anti-parallel
Strand 9
A
180 190anti-parallel
Strand 10
A
195 205anti-parallel
Strand 11
A
208 219anti-parallel
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There are 18 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 252first strand
Strand 2
A
255 264anti-parallel
Strand 3
A
240 244anti-parallel
Strand 4
A
232 236anti-parallel
Strand 5
A
745 758anti-parallel
Strand 6
A
726 740anti-parallel
Strand 7
A
711 722anti-parallel
Strand 8
A
697 706anti-parallel
Strand 9
A
682 693anti-parallel
Strand 10
A
650 659anti-parallel
Strand 11
A
634 647anti-parallel
Strand 12
A
620 629anti-parallel
Strand 13
A
604 615anti-parallel
Strand 14
A
573 584anti-parallel
Strand 15
A
555 567anti-parallel
Strand 16
A
504 517anti-parallel
Strand 17
A
493 497anti-parallel
Strand 18
B
1002 1003anti-parallel
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There are 16 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 252first strand
Strand 2
A
255 264anti-parallel
Strand 3
A
269 280anti-parallel
Strand 4
A
283 292anti-parallel
Strand 5
A
310 321anti-parallel
Strand 6
A
325 334anti-parallel
Strand 7
A
354 365anti-parallel
Strand 8
A
368 379anti-parallel
Strand 9
A
388 400anti-parallel
Strand 10
A
407 419anti-parallel
Strand 11
A
426 441anti-parallel
Strand 12
A
445 461anti-parallel
Strand 13
A
477 491anti-parallel
Strand 14
A
504 517anti-parallel
Strand 15
A
493 497anti-parallel
Strand 16
B
1002 1003anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1041 1043first strand
Strand 2
B
1015 1020parallel
Strand 3
B
1054 1057parallel
Strand 4
B
1075 1089anti-parallel
Strand 5
B
1061 1069anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1041 1043first strand
Strand 2
B
1015 1020parallel
Strand 3
B
1054 1057parallel
Strand 4
B
1075 1089anti-parallel
Strand 5
B
1095 1107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il