Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q4F entry

There is 1 chain in PDB entry 4Q4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 37ASN 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4Q4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 55Right-handed alpha
Helix 2
2
A
71 77Right-handed alpha
Helix 3
3
A
121 124Right-handed 310
Helix 4
4
A
137 149Right-handed alpha
Helix 5
5
A
152 163Right-handed alpha
Helix 6
6
A
173 179Right-handed alpha
Helix 7
7
A
182 192Right-handed alpha
Helix 8
8
A
221 225Right-handed 310
Helix 9
9
A
270 274Right-handed 310
Helix 10
10
A
298 303Right-handed 310
Helix 11
11
A
306 312Right-handed 310
Helix 12
12
A
340 343Right-handed 310
Helix 13
13
A
346 353Right-handed alpha
Helix 14
14
A
359 364Right-handed alpha
Helix 15
15
A
395 399Right-handed 310
Helix 16
16
A
418 429Right-handed alpha
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There are 4 sheets in PDB entry 4Q4F. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 231first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
108 119anti-parallel
Strand 4
A
83 103anti-parallel
Strand 5
A
60 69anti-parallel
Strand 6
A
404 416anti-parallel
Strand 7
A
375 389anti-parallel
Strand 8
A
366 370anti-parallel
Strand 9
A
290 296anti-parallel
Strand 10
A
277 287anti-parallel
Strand 11
A
266 268anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 231first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
108 119anti-parallel
Strand 4
A
83 103anti-parallel
Strand 5
A
60 69anti-parallel
Strand 6
A
404 416anti-parallel
Strand 7
A
375 389anti-parallel
Strand 8
A
335 338anti-parallel
Strand 9
A
323 325anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
168 172anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
198 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il