Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q4J entry

There are 2 chains in PDB entry 4Q4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2PHE 569
B
 GLY 10GLY 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4Q4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 9Right-handed alpha
Helix 2
2
A
11 42Right-handed alpha
Helix 3
3
A
48 97Right-handed alpha
Helix 4
4
A
102 107Right-handed alpha
Helix 5
5
A
108 132Right-handed alpha
Helix 6
6
A
132 152Right-handed alpha
Helix 7
7
A
154 161Right-handed 310
Helix 8
8
A
162 201Right-handed alpha
Helix 9
9
A
201 208Right-handed alpha
Helix 10
10
A
210 264Right-handed alpha
Helix 11
11
A
269 311Right-handed alpha
Helix 12
12
A
373 379Right-handed alpha
Helix 13
13
A
398 400Right-handed 310
Helix 14
14
A
401 407Right-handed alpha
Helix 15
15
A
423 428Right-handed alpha
Helix 16
16
A
435 446Right-handed alpha
Helix 17
17
A
448 454Right-handed alpha
Helix 18
18
A
457 460Right-handed 310
Helix 19
19
A
464 468Right-handed 310
Helix 20
20
A
471 486Right-handed alpha
Helix 21
21
A
503 514Right-handed alpha
Helix 22
22
A
527 533Right-handed alpha
Helix 23
23
A
550 557Right-handed alpha
Helix 24
24
A
558 569Right-handed alpha
Helix 25
25
B
20 29Right-handed alpha
Helix 26
26
B
35 67Right-handed alpha
Helix 27
27
B
75 123Right-handed alpha
Helix 28
28
B
124 131Right-handed alpha
Helix 29
29
B
132 152Right-handed alpha
Helix 30
30
B
153 176Right-handed alpha
Helix 31
31
B
176 184Right-handed alpha
Helix 32
32
B
186 225Right-handed alpha
Helix 33
33
B
225 232Right-handed alpha
Helix 34
34
B
234 259Right-handed alpha
Helix 35
35
B
262 281Right-handed alpha
Helix 36
36
B
281 288Right-handed alpha
Helix 37
37
B
292 304Right-handed alpha
Helix 38
38
B
307 334Right-handed alpha
Helix 39
39
B
396 402Right-handed alpha
Helix 40
40
B
420 422Right-handed 310
Helix 41
41
B
423 430Right-handed alpha
Helix 42
42
B
444 451Right-handed alpha
Helix 43
43
B
459 468Right-handed alpha
Helix 44
44
B
470 475Right-handed alpha
Helix 45
45
B
479 483Right-handed 310
Helix 46
46
B
485 489Right-handed 310
Helix 47
47
B
493 508Right-handed alpha
Helix 48
48
B
523 539Right-handed alpha
Helix 49
49
B
549 554Right-handed alpha
Helix 50
50
B
572 579Right-handed alpha
Helix 51
51
B
581 589Right-handed alpha
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There are 5 sheets in PDB entry 4Q4J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 356first strand
Strand 2
A
332 338anti-parallel
Strand 3
A
387 392anti-parallel
Strand 4
A
395 396anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 412first strand
Strand 2
A
490 494parallel
Strand 3
A
520 525parallel
Strand 4
A
361 365parallel
Strand 5
A
536 541parallel
Strand 6
A
544 549anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
462 463anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 378first strand
Strand 2
B
355 362anti-parallel
Strand 3
B
409 414anti-parallel
Strand 4
B
417 418anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 433first strand
Strand 2
B
512 515parallel
Strand 3
B
542 545parallel
Strand 4
B
383 387parallel
Strand 5
B
558 563parallel
Strand 6
B
566 567anti-parallel
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