Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q58


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q58 entry

There are 4 chains in PDB entry 4Q58 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 38MET 262
B
 ASP 41PRO 263
C
 ASP 1126GLN 1319
D
 LEU 1127PRO 1320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4Q58. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 57Right-handed alpha
Helix 2
2
A
73 83Right-handed alpha
Helix 3
3
A
95 113Right-handed alpha
Helix 4
4
A
121 127Right-handed alpha
Helix 5
5
A
129 146Right-handed alpha
Helix 6
6
A
159 172Right-handed alpha
Helix 7
7
A
190 201Right-handed alpha
Helix 8
8
A
206 213Right-handed alpha
Helix 9
9
A
214 229Right-handed alpha
Helix 10
10
A
237 242Right-handed alpha
Helix 11
11
A
247 260Right-handed alpha
Helix 12
12
B
42 57Right-handed alpha
Helix 13
13
B
65 70Right-handed alpha
Helix 14
14
B
73 85Right-handed alpha
Helix 15
15
B
95 113Right-handed alpha
Helix 16
16
B
121 127Right-handed alpha
Helix 17
17
B
129 145Right-handed alpha
Helix 18
18
B
159 172Right-handed alpha
Helix 19
19
B
184 188Right-handed 310
Helix 20
20
B
190 201Right-handed alpha
Helix 21
21
B
208 212Right-handed 310
Helix 22
22
B
214 229Right-handed alpha
Helix 23
23
B
237 242Right-handed alpha
Helix 24
24
B
247 261Right-handed alpha
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There are 10 sheets in PDB entry 4Q58. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1131 1137first strand
Strand 2
C
1143 1148anti-parallel
Strand 3
C
1180 1183anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1172 1176first strand
Strand 2
C
1156 1163anti-parallel
Strand 3
C
1191 1200anti-parallel
Strand 4
C
1203 1204anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1172 1176first strand
Strand 2
C
1156 1163anti-parallel
Strand 3
C
1191 1200anti-parallel
Strand 4
C
1211 1214anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1227 1229first strand
Strand 2
C
1236 1239anti-parallel
Strand 3
C
1284 1285anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1250 1259first strand
Strand 2
C
1294 1302anti-parallel
Strand 3
C
1305 1306anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1250 1259first strand
Strand 2
C
1294 1302anti-parallel
Strand 3
C
1310 1312anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1134 1137first strand
Strand 2
D
1143 1146anti-parallel
Strand 3
D
1180 1182anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1172 1176first strand
Strand 2
D
1154 1163anti-parallel
Strand 3
D
1191 1200anti-parallel
Strand 4
D
1211 1214anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1227 1230first strand
Strand 2
D
1236 1239anti-parallel
Strand 3
D
1282 1285anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1271 1274first strand
Strand 2
D
1250 1259anti-parallel
Strand 3
D
1294 1302anti-parallel
Strand 4
D
1310 1314anti-parallel
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