Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q5C entry

There are 2 chains in PDB entry 4Q5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ALA 523
B
 ASN 5ALA 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 4Q5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 16Right-handed alpha
Helix 2
2
A
18 26Right-handed alpha
Helix 3
3
A
34 37Right-handed 310
Helix 4
4
A
41 48Right-handed alpha
Helix 5
5
A
63 68Right-handed alpha
Helix 6
6
A
70 79Right-handed alpha
Helix 7
7
A
99 105Right-handed alpha
Helix 8
8
A
107 112Right-handed 310
Helix 9
9
A
118 120Right-handed 310
Helix 10
10
A
121 129Right-handed alpha
Helix 11
11
A
141 146Right-handed 310
Helix 12
12
A
147 154Right-handed alpha
Helix 13
13
A
155 157Right-handed 310
Helix 14
14
A
181 188Right-handed 310
Helix 15
15
A
197 201Right-handed 310
Helix 16
16
A
213 220Right-handed alpha
Helix 17
17
A
226 230Right-handed 310
Helix 18
18
A
242 250Right-handed alpha
Helix 19
19
A
260 267Right-handed alpha
Helix 20
20
A
291 297Right-handed alpha
Helix 21
21
A
321 323Right-handed 310
Helix 22
22
A
334 342Right-handed alpha
Helix 23
23
A
362 368Right-handed alpha
Helix 24
24
A
370 375Right-handed alpha
Helix 25
25
A
378 384Right-handed alpha
Helix 26
26
A
402 405Right-handed 310
Helix 27
27
A
406 411Right-handed alpha
Helix 28
28
A
419 458Right-handed alpha
Helix 29
29
A
461 485Right-handed alpha
Helix 30
30
A
492 523Right-handed alpha
Helix 31
31
B
10 16Right-handed alpha
Helix 32
32
B
18 26Right-handed alpha
Helix 33
33
B
34 37Right-handed 310
Helix 34
34
B
41 48Right-handed alpha
Helix 35
35
B
63 68Right-handed alpha
Helix 36
36
B
70 79Right-handed alpha
Helix 37
37
B
99 105Right-handed alpha
Helix 38
38
B
107 112Right-handed 310
Helix 39
39
B
118 120Right-handed 310
Helix 40
40
B
121 129Right-handed alpha
Helix 41
41
B
141 146Right-handed 310
Helix 42
42
B
147 154Right-handed alpha
Helix 43
43
B
154 158Right-handed alpha
Helix 44
44
B
181 188Right-handed 310
Helix 45
45
B
197 201Right-handed 310
Helix 46
46
B
213 220Right-handed alpha
Helix 47
47
B
226 230Right-handed 310
Helix 48
48
B
242 250Right-handed alpha
Helix 49
49
B
260 267Right-handed alpha
Helix 50
50
B
291 297Right-handed alpha
Helix 51
51
B
321 323Right-handed 310
Helix 52
52
B
331 342Right-handed alpha
Helix 53
53
B
362 368Right-handed alpha
Helix 54
54
B
370 375Right-handed alpha
Helix 55
55
B
378 384Right-handed alpha
Helix 56
56
B
402 405Right-handed 310
Helix 57
57
B
406 411Right-handed alpha
Helix 58
58
B
419 458Right-handed alpha
Helix 59
59
B
461 485Right-handed alpha
Helix 60
60
B
492 523Right-handed alpha
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There are 12 sheets in PDB entry 4Q5C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
58 59anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
159 161anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
279 287anti-parallel
Strand 3
A
269 276anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 305first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
316 317anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
355 356anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
58 59anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
159 161anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
279 287anti-parallel
Strand 3
B
269 276anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 305first strand
Strand 2
B
325 327anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
316 317anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
355 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il