Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q5J entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 4Q5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 852ASP 1038
A
 HIS 1040LEU 1041
A
 VAL 1043VAL 1043
A
 THR 1045GLN 1059
A
 PHE 1061ALA 1160
B
 ASP 852ASP 1038
B
 HIS 1040LEU 1041
B
 VAL 1043VAL 1043
B
 THR 1045GLN 1059
B
 PHE 1061ALA 1160
F
 THR 307CYS 322
E
 MET 308CYS 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4Q5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
861 865Right-handed 310
Helix 2
2
A
872 880Right-handed alpha
Helix 3
3
A
884 886Right-handed 310
Helix 4
4
A
922 929Right-handed alpha
Helix 5
5
A
930 934Right-handed 310
Helix 6
6
A
979 1000Right-handed alpha
Helix 7
7
A
1011 1013Right-handed 310
Helix 8
8
A
1054 1060Right-handed alpha
Helix 9
9
A
1064 1082Right-handed alpha
Helix 10
10
A
1095 1107Right-handed alpha
Helix 11
11
A
1113 1120Right-handed alpha
Helix 12
12
A
1123 1138Right-handed alpha
Helix 13
13
A
1141 1145Right-handed 310
Helix 14
14
A
1147 1159Right-handed alpha
Helix 15
15
B
872 880Right-handed alpha
Helix 16
16
B
922 929Right-handed alpha
Helix 17
17
B
930 934Right-handed 310
Helix 18
18
B
963 969Right-handed alpha
Helix 19
19
B
979 1000Right-handed alpha
Helix 20
20
B
1054 1060Right-handed alpha
Helix 21
21
B
1064 1082Right-handed alpha
Helix 22
22
B
1095 1103Right-handed alpha
Helix 23
23
B
1107 1111Right-handed 310
Helix 24
24
B
1113 1120Right-handed alpha
Helix 25
25
B
1123 1138Right-handed alpha
Helix 26
26
B
1141 1145Right-handed 310
Helix 27
27
B
1147 1160Right-handed alpha
Helix 28
28
F
308 322Right-handed alpha
Helix 29
29
E
309 322Right-handed alpha
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There are 8 sheets in PDB entry 4Q5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 870first strand
Strand 2
A
942 948parallel
Strand 3
A
951 957anti-parallel
Strand 4
A
907 913anti-parallel
Strand 5
A
895 901anti-parallel
Strand 6
A
888 890anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1004 1006first strand
Strand 2
A
1032 1034anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1015 1017first strand
Strand 2
A
1023 1025anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1041 1042first strand
Strand 2
A
1062 1063anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
869 870first strand
Strand 2
B
942 948parallel
Strand 3
B
951 957anti-parallel
Strand 4
B
907 913anti-parallel
Strand 5
B
895 901anti-parallel
Strand 6
B
888 891anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1004 1006first strand
Strand 2
B
1032 1034anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1015 1017first strand
Strand 2
B
1023 1025anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1041 1042first strand
Strand 2
B
1062 1063anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il