Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Q5V entry

There are 6 chains in PDB entry 4Q5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 338	THR 1244
B	G 1	C 11
C	A 109	C 121
E	GLU 338	THR 1244
F	G 201	C 211
G	A 309	C 321

There are 64 helices in PDB entry 4Q5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	409	420	Right-handed alpha
Helix 2	2	A	420	426	Right-handed alpha
Helix 3	3	A	482	491	Right-handed alpha
Helix 4	4	A	522	524	Right-handed 310
Helix 5	5	A	597	606	Right-handed alpha
Helix 6	6	A	614	630	Right-handed alpha
Helix 7	7	A	642	654	Right-handed alpha
Helix 8	8	A	658	663	Right-handed 310
Helix 9	9	A	679	685	Right-handed alpha
Helix 10	10	A	693	701	Right-handed alpha
Helix 11	11	A	707	717	Right-handed alpha
Helix 12	12	A	726	732	Right-handed alpha
Helix 13	13	A	734	759	Right-handed alpha
Helix 14	14	A	760	773	Right-handed alpha
Helix 15	15	A	775	780	Right-handed alpha
Helix 16	16	A	783	799	Right-handed alpha
Helix 17	17	A	863	872	Right-handed alpha
Helix 18	18	A	909	930	Right-handed alpha
Helix 19	19	A	937	961	Right-handed alpha
Helix 20	20	A	969	993	Right-handed alpha
Helix 21	21	A	1014	1031	Right-handed alpha
Helix 22	22	A	1077	1081	Right-handed 310
Helix 23	23	A	1085	1101	Right-handed alpha
Helix 24	24	A	1104	1126	Right-handed alpha
Helix 25	25	A	1142	1146	Right-handed 310
Helix 26	26	A	1148	1151	Right-handed 310
Helix 27	27	A	1152	1165	Right-handed alpha
Helix 28	28	A	1187	1190	Right-handed 310
Helix 29	29	A	1194	1201	Right-handed alpha
Helix 30	30	A	1207	1215	Right-handed alpha
Helix 31	31	A	1215	1225	Right-handed alpha
Helix 32	32	A	1231	1239	Right-handed alpha
Helix 33	33	E	368	371	Right-handed 310
Helix 34	34	E	409	420	Right-handed alpha
Helix 35	35	E	420	426	Right-handed alpha
Helix 36	36	E	482	492	Right-handed alpha
Helix 37	37	E	522	524	Right-handed 310
Helix 38	38	E	597	606	Right-handed alpha
Helix 39	39	E	614	630	Right-handed alpha
Helix 40	40	E	642	654	Right-handed alpha
Helix 41	41	E	658	663	Right-handed 310
Helix 42	42	E	679	685	Right-handed alpha
Helix 43	43	E	693	701	Right-handed alpha
Helix 44	44	E	707	717	Right-handed alpha
Helix 45	45	E	726	731	Right-handed alpha
Helix 46	46	E	734	759	Right-handed alpha
Helix 47	47	E	760	773	Right-handed alpha
Helix 48	48	E	775	781	Right-handed alpha
Helix 49	49	E	784	799	Right-handed alpha
Helix 50	50	E	863	872	Right-handed alpha
Helix 51	51	E	909	930	Right-handed alpha
Helix 52	52	E	937	961	Right-handed alpha
Helix 53	53	E	969	993	Right-handed alpha
Helix 54	54	E	1014	1030	Right-handed alpha
Helix 55	55	E	1077	1081	Right-handed 310
Helix 56	56	E	1085	1101	Right-handed alpha
Helix 57	57	E	1104	1126	Right-handed alpha
Helix 58	58	E	1148	1151	Right-handed 310
Helix 59	59	E	1152	1165	Right-handed alpha
Helix 60	60	E	1187	1190	Right-handed 310
Helix 61	61	E	1194	1201	Right-handed alpha
Helix 62	62	E	1207	1215	Right-handed alpha
Helix 63	63	E	1215	1225	Right-handed alpha
Helix 64	64	E	1231	1239	Right-handed alpha

There are 14 sheets in PDB entry 4Q5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	380	first strand
Strand 2	A	359	367	anti-parallel
Strand 3	A	340	350	anti-parallel
Strand 4	A	497	502	anti-parallel
Strand 5	A	526	529	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	438	first strand
Strand 2	A	449	457	anti-parallel
Strand 3	A	385	391	anti-parallel
Strand 4	A	473	477	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	403	407	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	611	first strand
Strand 2	A	581	586	parallel
Strand 3	A	555	568	anti-parallel
Strand 4	A	537	548	anti-parallel
Strand 5	A	633	636	parallel
Strand 6	A	689	692	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	852	first strand
Strand 2	A	1038	1051	anti-parallel
Strand 3	A	856	861	anti-parallel
Strand 4	A	1005	1009	anti-parallel
Strand 5	A	997	1000	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	852	first strand
Strand 2	A	1038	1051	anti-parallel
Strand 3	A	1054	1062	anti-parallel
Strand 4	A	1068	1075	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1135	1138	first strand
Strand 2	A	1174	1179	anti-parallel
Strand 3	A	1192	1193	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	380	first strand
Strand 2	E	359	366	anti-parallel
Strand 3	E	340	349	anti-parallel
Strand 4	E	497	502	anti-parallel
Strand 5	E	526	529	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	431	436	first strand
Strand 2	E	451	457	anti-parallel
Strand 3	E	385	391	anti-parallel
Strand 4	E	473	477	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	394	397	first strand
Strand 2	E	402	407	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	609	611	first strand
Strand 2	E	581	586	parallel
Strand 3	E	555	568	anti-parallel
Strand 4	E	537	548	anti-parallel
Strand 5	E	633	636	parallel
Strand 6	E	689	692	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	850	852	first strand
Strand 2	E	1038	1051	anti-parallel
Strand 3	E	856	861	anti-parallel
Strand 4	E	1005	1009	anti-parallel
Strand 5	E	997	1000	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	850	852	first strand
Strand 2	E	1038	1051	anti-parallel
Strand 3	E	1054	1062	anti-parallel
Strand 4	E	1068	1075	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1135	1138	first strand
Strand 2	E	1174	1179	anti-parallel
Strand 3	E	1192	1193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Q5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q5V