Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q60 entry

There are 2 chains in PDB entry 4Q60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -3VAL 310
B
 LEU -3VAL 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4Q60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 0Right-handed 310
Helix 2
2
A
31 43Right-handed alpha
Helix 3
3
A
43 52Right-handed alpha
Helix 4
4
A
89 103Right-handed alpha
Helix 5
5
A
176 178Right-handed 310
Helix 6
6
A
179 198Right-handed alpha
Helix 7
7
A
201 205Right-handed 310
Helix 8
8
A
240 251Right-handed alpha
Helix 9
9
B
-2 0Right-handed 310
Helix 10
10
B
31 43Right-handed alpha
Helix 11
11
B
43 52Right-handed alpha
Helix 12
12
B
89 103Right-handed alpha
Helix 13
13
B
176 178Right-handed 310
Helix 14
14
B
179 198Right-handed alpha
Helix 15
15
B
201 205Right-handed 310
Helix 16
16
B
240 251Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4Q60.

There are 32 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 148first strand
Strand 2
A
152 160anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
209 214parallel
Strand 5
A
221 226anti-parallel
Strand 6
A
260 264parallel
Strand 7
A
269 277anti-parallel
Strand 8
A
280 287anti-parallel
Strand 9
A
130 133anti-parallel
Strand 10
A
120 124anti-parallel
Strand 11
A
109 114anti-parallel
Strand 12
A
75 80parallel
Strand 13
A
61 66anti-parallel
Strand 14
A
15 22parallel
Strand 15
A
2 12anti-parallel
Strand 16
A
289 300anti-parallel
Strand 17
B
289 300anti-parallel
Strand 18
B
2 12anti-parallel
Strand 19
B
15 22anti-parallel
Strand 20
B
61 66parallel
Strand 21
B
75 80anti-parallel
Strand 22
B
109 115parallel
Strand 23
B
118 124anti-parallel
Strand 24
B
130 133anti-parallel
Strand 25
B
280 287anti-parallel
Strand 26
B
269 277anti-parallel
Strand 27
B
260 264anti-parallel
Strand 28
B
221 226parallel
Strand 29
B
209 214anti-parallel
Strand 30
B
164 168parallel
Strand 31
B
152 160anti-parallel
Strand 32
B
138 148anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il