Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q6M entry

There is 1 chain in PDB entry 4Q6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 22VAL 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4Q6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 35Right-handed 310
Helix 2
2
A
49 62Right-handed alpha
Helix 3
3
A
77 83Right-handed alpha
Helix 4
4
A
91 95Right-handed 310
Helix 5
5
A
105 117Right-handed alpha
Helix 6
6
A
166 180Right-handed alpha
Helix 7
7
A
184 188Right-handed 310
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
200 204Right-handed 310
Helix 10
10
A
206 214Right-handed alpha
Helix 11
11
A
228 248Right-handed alpha
Helix 12
12
A
258 267Right-handed alpha
Helix 13
13
A
300 304Right-handed 310
Helix 14
14
A
404 406Right-handed 310
Helix 15
15
A
407 411Right-handed 310
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There are 7 sheets in PDB entry 4Q6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
38 42parallel
Strand 4
A
123 130parallel
Strand 5
A
217 224parallel
Strand 6
A
151 154anti-parallel
Strand 7
A
190 193parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
251 253anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
143 144parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
272 275anti-parallel
Strand 3
A
306 308anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 296first strand
Strand 2
A
329 339parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
313 318anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 360first strand
Strand 2
A
347 352anti-parallel
Strand 3
A
370 373anti-parallel
Strand 4
A
400 402anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 367first strand
Strand 2
A
428 437parallel
Strand 3
A
418 425anti-parallel
Strand 4
A
380 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il