Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q6Z entry

There are 2 chains in PDB entry 4Q6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 78GLN 212
B
 TYR 78GLN 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4Q6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 93Right-handed alpha
Helix 2
2
A
117 131Right-handed alpha
Helix 3
3
A
139 151Right-handed alpha
Helix 4
4
A
160 171Right-handed alpha
Helix 5
5
B
79 93Right-handed alpha
Helix 6
6
B
117 130Right-handed alpha
Helix 7
7
B
139 151Right-handed alpha
Helix 8
8
B
160 171Right-handed alpha
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There are 4 sheets in PDB entry 4Q6Z. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
175 183parallel
Strand 3
A
102 105parallel
Strand 4
A
136 137parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
175 183parallel
Strand 3
A
188 196anti-parallel
Strand 4
A
202 209anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
175 183parallel
Strand 3
B
101 105parallel
Strand 4
B
135 137parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
175 183parallel
Strand 3
B
188 196anti-parallel
Strand 4
B
201 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il