Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q7F entry

There is 1 chain in PDB entry 4Q7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4Q7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 44Right-handed alpha
Helix 2
2
A
61 70Right-handed alpha
Helix 3
3
A
74 84Right-handed alpha
Helix 4
4
A
92 97Right-handed 310
Helix 5
5
A
99 110Right-handed alpha
Helix 6
6
A
150 154Right-handed 310
Helix 7
7
A
156 161Right-handed alpha
Helix 8
8
A
167 183Right-handed alpha
Helix 9
9
A
212 221Right-handed alpha
Helix 10
10
A
222 224Right-handed 310
Helix 11
11
A
287 302Right-handed alpha
Helix 12
12
A
318 323Right-handed alpha
Helix 13
13
A
325 340Right-handed alpha
Helix 14
14
A
361 368Right-handed alpha
Helix 15
15
A
381 393Right-handed alpha
Helix 16
16
A
406 409Right-handed 310
Helix 17
17
A
414 417Right-handed 310
Helix 18
18
A
460 464Right-handed alpha
Helix 19
19
A
469 473Right-handed 310
Helix 20
20
A
484 496Right-handed alpha
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There are 8 sheets in PDB entry 4Q7F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
49 53parallel
Strand 3
A
3 9parallel
Strand 4
A
254 262anti-parallel
Strand 5
A
268 277anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
119 121anti-parallel
Strand 3
A
163 165anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 136first strand
Strand 2
A
139 147anti-parallel
Strand 3
A
185 191parallel
Strand 4
A
226 228parallel
Strand 5
A
243 248parallel
Strand 6
A
235 240anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 307first strand
Strand 2
A
358 360anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
A
354 355anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
343 347anti-parallel
Strand 3
A
453 459parallel
Strand 4
A
374 380anti-parallel
Strand 5
A
477 481anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
401 404anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
438 443anti-parallel
Strand 3
A
425 429anti-parallel
Strand 4
A
506 510parallel
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