Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Q7J entry

There are 8 chains in PDB entry 4Q7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	GLN 281
B	THR 8	GLY 393
C	ASN 8	ARG 569
D	GLU 3	SER 179
E	ILE 3	SER 282
F	ARG 7	GLY 393
G	ASN 8	ARG 569
H	THR 2	ASN 178

There are 98 helices in PDB entry 4Q7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	16	Right-handed alpha
Helix 2	2	A	18	29	Right-handed alpha
Helix 3	3	A	32	52	Right-handed alpha
Helix 4	4	A	81	84	Right-handed 310
Helix 5	5	A	85	103	Right-handed alpha
Helix 6	6	A	106	114	Right-handed alpha
Helix 7	7	A	114	126	Right-handed alpha
Helix 8	8	A	161	176	Right-handed alpha
Helix 9	9	A	186	203	Right-handed alpha
Helix 10	10	A	207	227	Right-handed alpha
Helix 11	11	A	240	248	Right-handed alpha
Helix 12	12	A	270	279	Right-handed alpha
Helix 13	13	B	23	39	Right-handed alpha
Helix 14	14	B	83	93	Right-handed alpha
Helix 15	15	B	114	126	Right-handed alpha
Helix 16	16	B	142	160	Right-handed alpha
Helix 17	17	B	173	179	Right-handed alpha
Helix 18	18	B	181	198	Right-handed alpha
Helix 19	19	B	282	286	Right-handed 310
Helix 20	20	C	9	19	Right-handed alpha
Helix 21	21	C	27	40	Right-handed alpha
Helix 22	22	C	47	54	Right-handed alpha
Helix 23	23	C	61	74	Right-handed alpha
Helix 24	24	C	88	111	Right-handed alpha
Helix 25	25	C	119	139	Right-handed alpha
Helix 26	26	C	143	151	Right-handed alpha
Helix 27	27	C	167	174	Right-handed alpha
Helix 28	28	C	182	193	Right-handed alpha
Helix 29	29	C	225	243	Right-handed alpha
Helix 30	30	C	253	266	Right-handed alpha
Helix 31	31	C	276	281	Right-handed alpha
Helix 32	32	C	282	290	Right-handed alpha
Helix 33	33	C	291	302	Right-handed alpha
Helix 34	34	C	326	346	Right-handed alpha
Helix 35	35	C	366	378	Right-handed alpha
Helix 36	36	C	417	432	Right-handed alpha
Helix 37	37	C	439	450	Right-handed alpha
Helix 38	38	C	451	453	Right-handed 310
Helix 39	39	C	454	460	Right-handed alpha
Helix 40	40	C	474	478	Right-handed 310
Helix 41	41	C	503	517	Right-handed alpha
Helix 42	42	C	518	520	Right-handed 310
Helix 43	43	C	540	544	Right-handed 310
Helix 44	44	D	4	19	Right-handed alpha
Helix 45	45	D	78	83	Right-handed alpha
Helix 46	46	D	84	102	Right-handed alpha
Helix 47	47	D	142	146	Right-handed 310
Helix 48	48	D	170	176	Right-handed alpha
Helix 49	49	E	6	15	Right-handed alpha
Helix 50	50	E	18	29	Right-handed alpha
Helix 51	51	E	32	52	Right-handed alpha
Helix 52	52	E	79	84	Right-handed alpha
Helix 53	53	E	85	102	Right-handed alpha
Helix 54	54	E	106	114	Right-handed alpha
Helix 55	55	E	114	126	Right-handed alpha
Helix 56	56	E	161	176	Right-handed alpha
Helix 57	57	E	181	185	Right-handed 310
Helix 58	58	E	186	203	Right-handed alpha
Helix 59	59	E	207	226	Right-handed alpha
Helix 60	60	E	240	248	Right-handed alpha
Helix 61	61	E	270	279	Right-handed alpha
Helix 62	62	E	280	282	Right-handed 310
Helix 63	63	F	20	22	Right-handed 310
Helix 64	64	F	23	39	Right-handed alpha
Helix 65	65	F	83	93	Right-handed alpha
Helix 66	66	F	112	126	Right-handed alpha
Helix 67	67	F	137	140	Right-handed 310
Helix 68	68	F	142	160	Right-handed alpha
Helix 69	69	F	173	179	Right-handed alpha
Helix 70	70	F	181	198	Right-handed alpha
Helix 71	71	F	282	286	Right-handed 310
Helix 72	72	G	9	19	Right-handed alpha
Helix 73	73	G	27	41	Right-handed alpha
Helix 74	74	G	47	54	Right-handed alpha
Helix 75	75	G	61	75	Right-handed alpha
Helix 76	76	G	88	111	Right-handed alpha
Helix 77	77	G	119	139	Right-handed alpha
Helix 78	78	G	143	151	Right-handed alpha
Helix 79	79	G	167	174	Right-handed alpha
Helix 80	80	G	182	192	Right-handed alpha
Helix 81	81	G	225	243	Right-handed alpha
Helix 82	82	G	244	247	Right-handed 310
Helix 83	83	G	253	264	Right-handed alpha
Helix 84	84	G	276	280	Right-handed 310
Helix 85	85	G	282	290	Right-handed alpha
Helix 86	86	G	291	302	Right-handed alpha
Helix 87	87	G	326	346	Right-handed alpha
Helix 88	88	G	349	353	Right-handed 310
Helix 89	89	G	366	378	Right-handed alpha
Helix 90	90	G	417	433	Right-handed alpha
Helix 91	91	G	439	450	Right-handed alpha
Helix 92	92	G	451	453	Right-handed 310
Helix 93	93	G	454	459	Right-handed alpha
Helix 94	94	G	474	478	Right-handed 310
Helix 95	95	G	503	519	Right-handed alpha
Helix 96	96	G	541	545	Right-handed 310
Helix 97	97	H	3	19	Right-handed alpha
Helix 98	98	H	87	104	Right-handed alpha

There are 32 sheets in PDB entry 4Q7J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	66	first strand
Strand 2	A	69	76	anti-parallel
Strand 3	A	130	138	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	147	first strand
Strand 2	A	151	158	anti-parallel
Strand 3	A	251	259	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	11	18	parallel
Strand 4	B	100	106	parallel
Strand 5	B	129	135	parallel
Strand 6	B	169	172	parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	291	293	anti-parallel
Strand 3	B	241	245	anti-parallel
Strand 4	B	251	259	anti-parallel
Strand 5	B	273	279	anti-parallel
Strand 6	B	224	230	anti-parallel
Strand 7	B	216	220	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	291	293	anti-parallel
Strand 3	B	241	245	anti-parallel
Strand 4	B	251	259	anti-parallel
Strand 5	B	264	265	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	310	first strand
Strand 2	B	355	368	anti-parallel
Strand 3	B	335	342	anti-parallel
Strand 4	B	329	332	anti-parallel
Strand 5	B	373	378	anti-parallel
Strand 6	B	381	391	anti-parallel
Strand 7	B	299	310	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	199	202	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	211	first strand
Strand 2	C	219	223	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	359	363	anti-parallel
Strand 3	C	354	356	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	307	first strand
Strand 2	C	313	315	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	395	first strand
Strand 2	C	398	401	anti-parallel
Strand 3	C	404	405	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	434	first strand
Strand 2	C	437	438	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	462	first strand
Strand 2	C	471	472	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	484	first strand
Strand 2	C	487	499	anti-parallel
Strand 3	C	553	566	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	36	39	anti-parallel
Strand 3	D	23	31	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	115	first strand
Strand 2	D	119	124	anti-parallel
Strand 3	D	127	132	anti-parallel
Strand 4	D	166	169	parallel
Strand 5	D	151	159	anti-parallel
Strand 6	D	107	115	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	66	first strand
Strand 2	E	69	76	anti-parallel
Strand 3	E	130	138	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	147	first strand
Strand 2	E	151	158	anti-parallel
Strand 3	E	251	259	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	74	80	anti-parallel
Strand 3	F	11	18	parallel
Strand 4	F	100	106	parallel
Strand 5	F	130	135	parallel
Strand 6	F	169	172	parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	213	first strand
Strand 2	F	291	293	anti-parallel
Strand 3	F	241	245	anti-parallel
Strand 4	F	251	259	anti-parallel
Strand 5	F	273	279	anti-parallel
Strand 6	F	224	230	anti-parallel
Strand 7	F	216	220	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	213	first strand
Strand 2	F	291	293	anti-parallel
Strand 3	F	241	245	anti-parallel
Strand 4	F	251	259	anti-parallel
Strand 5	F	264	265	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	267	269	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	299	310	first strand
Strand 2	F	355	368	anti-parallel
Strand 3	F	335	342	anti-parallel
Strand 4	F	329	332	anti-parallel
Strand 5	F	373	378	anti-parallel
Strand 6	F	381	391	anti-parallel
Strand 7	F	299	310	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	207	212	first strand
Strand 2	G	218	223	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	273	first strand
Strand 2	G	359	363	anti-parallel
Strand 3	G	354	356	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	305	307	first strand
Strand 2	G	313	315	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	392	395	first strand
Strand 2	G	398	401	anti-parallel
Strand 3	G	404	405	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	461	462	first strand
Strand 2	G	471	472	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	482	483	first strand
Strand 2	G	488	500	anti-parallel
Strand 3	G	552	565	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	70	71	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	31	first strand
Strand 2	H	36	39	anti-parallel
Strand 3	H	46	48	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	115	first strand
Strand 2	H	119	123	anti-parallel
Strand 3	H	128	132	anti-parallel
Strand 4	H	166	169	parallel
Strand 5	H	152	159	anti-parallel
Strand 6	H	108	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Q7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q7J