Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q7M entry

There is 1 chain in PDB entry 4Q7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 352GLN 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4Q7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
393 402Right-handed alpha
Helix 2
2
B
420 422Right-handed 310
Helix 3
3
B
423 430Right-handed alpha
Helix 4
4
B
444 450Right-handed alpha
Helix 5
5
B
457 468Right-handed alpha
Helix 6
6
B
470 476Right-handed alpha
Helix 7
7
B
479 483Right-handed 310
Helix 8
8
B
485 490Right-handed alpha
Helix 9
9
B
493 508Right-handed alpha
Helix 10
10
B
524 539Right-handed alpha
Helix 11
11
B
551 556Right-handed 310
Helix 12
12
B
572 580Right-handed alpha
Helix 13
13
B
581 592Right-handed alpha
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There are 2 sheets in PDB entry 4Q7M. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 378first strand
Strand 2
B
355 362anti-parallel
Strand 3
B
409 414anti-parallel
Strand 4
B
417 418anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 434first strand
Strand 2
B
512 516parallel
Strand 3
B
542 546parallel
Strand 4
B
383 387parallel
Strand 5
B
558 563parallel
Strand 6
B
566 571anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il