Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q7R entry

There are 4 chains in PDB entry 4Q7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5GLN 64
A
 SER 69LYS 231
B
 MET 5GLN 64
B
 SER 69SER 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4Q7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
2
A
69 73Right-handed 310
Helix 2
3
A
81 86Right-handed alpha
Helix 3
4
A
225 230Right-handed 310
Helix 4
6
B
69 73Right-handed 310
Helix 5
7
B
81 86Right-handed alpha
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There are 2 sheets in PDB entry 4Q7R. Click on sheet of interest to get list of strands forming it: A, B,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
156 167anti-parallel
Strand 3
A
172 183anti-parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
104 114anti-parallel
Strand 6
A
117 127anti-parallel
Strand 7
A
12 22parallel
Strand 8
A
25 52anti-parallel
Strand 9
A
41 50anti-parallel
Strand 10
A
210 220anti-parallel
Strand 11
A
208 204anti-parallel
Strand 12
A
146 153anti-parallel
Strand 13
A
156 167anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
25 52anti-parallel
Strand 3
B
41 50anti-parallel
Strand 4
B
210 220anti-parallel
Strand 5
B
208 204anti-parallel
Strand 6
B
146 153anti-parallel
Strand 7
B
156 166anti-parallel
Strand 8
B
172 183anti-parallel
Strand 9
B
91 99anti-parallel
Strand 10
B
104 114anti-parallel
Strand 11
B
117 127anti-parallel
Strand 12
B
12 22parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il