Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q84 entry

There are 2 chains in PDB entry 4Q84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11ALA 581
B
 ALA 12TRP 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 4Q84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 27Right-handed alpha
Helix 2
2
A
64 82Right-handed alpha
Helix 3
3
A
83 87Right-handed 310
Helix 4
4
A
92 98Right-handed alpha
Helix 5
5
A
123 131Right-handed alpha
Helix 6
6
A
137 142Right-handed 310
Helix 7
7
A
171 178Right-handed alpha
Helix 8
8
A
188 212Right-handed alpha
Helix 9
9
A
220 225Right-handed alpha
Helix 10
10
A
227 240Right-handed alpha
Helix 11
11
A
279 292Right-handed alpha
Helix 12
12
A
309 315Right-handed alpha
Helix 13
13
A
315 326Right-handed alpha
Helix 14
14
A
331 336Right-handed 310
Helix 15
15
A
351 366Right-handed alpha
Helix 16
16
A
397 402Right-handed alpha
Helix 17
17
A
410 416Right-handed alpha
Helix 18
18
A
423 437Right-handed alpha
Helix 19
19
A
444 450Right-handed alpha
Helix 20
20
A
457 462Right-handed 310
Helix 21
21
A
463 475Right-handed alpha
Helix 22
22
A
477 493Right-handed alpha
Helix 23
23
A
497 515Right-handed alpha
Helix 24
24
A
520 523Right-handed 310
Helix 25
25
A
524 533Right-handed alpha
Helix 26
26
A
533 545Right-handed alpha
Helix 27
27
A
563 581Right-handed alpha
Helix 28
28
B
13 27Right-handed alpha
Helix 29
29
B
64 82Right-handed alpha
Helix 30
30
B
83 87Right-handed 310
Helix 31
31
B
92 98Right-handed alpha
Helix 32
32
B
123 131Right-handed alpha
Helix 33
33
B
137 142Right-handed 310
Helix 34
34
B
171 178Right-handed alpha
Helix 35
35
B
188 212Right-handed alpha
Helix 36
36
B
220 225Right-handed alpha
Helix 37
37
B
227 240Right-handed alpha
Helix 38
38
B
279 292Right-handed alpha
Helix 39
39
B
309 315Right-handed alpha
Helix 40
40
B
315 326Right-handed alpha
Helix 41
41
B
331 336Right-handed 310
Helix 42
42
B
351 366Right-handed alpha
Helix 43
43
B
397 402Right-handed alpha
Helix 44
44
B
410 416Right-handed alpha
Helix 45
45
B
423 437Right-handed alpha
Helix 46
46
B
444 450Right-handed alpha
Helix 47
47
B
457 462Right-handed 310
Helix 48
48
B
463 475Right-handed alpha
Helix 49
49
B
477 493Right-handed alpha
Helix 50
50
B
497 515Right-handed alpha
Helix 51
51
B
520 523Right-handed 310
Helix 52
52
B
524 533Right-handed alpha
Helix 53
53
B
533 545Right-handed alpha
Helix 54
54
B
563 584Right-handed alpha
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There are 8 sheets in PDB entry 4Q84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 40first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
57 62anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
166 170anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
371 375anti-parallel
Strand 4
A
381 386anti-parallel
Strand 5
A
183 186anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 248first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
270 276anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 40first strand
Strand 2
B
43 50anti-parallel
Strand 3
B
57 62anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
153 160anti-parallel
Strand 3
B
166 170anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
153 160anti-parallel
Strand 3
B
371 375anti-parallel
Strand 4
B
381 386anti-parallel
Strand 5
B
183 186anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 248first strand
Strand 2
B
257 264anti-parallel
Strand 3
B
269 276anti-parallel
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