Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q86

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Q86 entry

There are 8 chains in PDB entry 4Q86 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	PHE 583
B	THR 2	TRP 584
C	ALA 12	ALA 581
D	THR 2	PHE 583
E	THR 4	ALA 581
F	GLY 8	ALA 581
G	PRO 7	ALA 581
H	THR 2	TRP 584

There are226 helices in PDB entry 4Q86. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	28	Right-handed alpha
Helix 2	2	A	64	82	Right-handed alpha
Helix 3	3	A	83	87	Right-handed 310
Helix 4	4	A	91	98	Right-handed alpha
Helix 5	5	A	123	131	Right-handed alpha
Helix 6	6	A	137	141	Right-handed 310
Helix 7	7	A	171	178	Right-handed alpha
Helix 8	8	A	188	212	Right-handed alpha
Helix 9	9	A	220	225	Right-handed alpha
Helix 10	10	A	227	240	Right-handed alpha
Helix 11	11	A	279	292	Right-handed alpha
Helix 12	12	A	309	315	Right-handed alpha
Helix 13	13	A	315	326	Right-handed alpha
Helix 14	14	A	331	336	Right-handed 310
Helix 15	15	A	351	366	Right-handed alpha
Helix 16	16	A	397	402	Right-handed alpha
Helix 17	17	A	407	409	Right-handed 310
Helix 18	18	A	410	416	Right-handed alpha
Helix 19	19	A	423	437	Right-handed alpha
Helix 20	20	A	444	450	Right-handed alpha
Helix 21	21	A	457	461	Right-handed 310
Helix 22	22	A	463	475	Right-handed alpha
Helix 23	23	A	477	493	Right-handed alpha
Helix 24	24	A	494	496	Right-handed 310
Helix 25	25	A	497	515	Right-handed alpha
Helix 26	26	A	520	523	Right-handed 310
Helix 27	27	A	524	533	Right-handed alpha
Helix 28	28	A	533	545	Right-handed alpha
Helix 29	29	A	563	583	Right-handed alpha
Helix 30	30	B	12	28	Right-handed alpha
Helix 31	31	B	64	82	Right-handed alpha
Helix 32	32	B	83	87	Right-handed 310
Helix 33	33	B	91	98	Right-handed alpha
Helix 34	34	B	123	131	Right-handed alpha
Helix 35	35	B	137	142	Right-handed 310
Helix 36	36	B	171	178	Right-handed alpha
Helix 37	37	B	188	212	Right-handed alpha
Helix 38	38	B	220	225	Right-handed alpha
Helix 39	39	B	227	240	Right-handed alpha
Helix 40	40	B	279	292	Right-handed alpha
Helix 41	41	B	309	315	Right-handed alpha
Helix 42	42	B	315	326	Right-handed alpha
Helix 43	43	B	331	336	Right-handed 310
Helix 44	44	B	351	367	Right-handed alpha
Helix 45	45	B	397	402	Right-handed alpha
Helix 46	46	B	407	409	Right-handed 310
Helix 47	47	B	410	416	Right-handed alpha
Helix 48	48	B	423	437	Right-handed alpha
Helix 49	49	B	444	450	Right-handed alpha
Helix 50	50	B	463	475	Right-handed alpha
Helix 51	51	B	477	493	Right-handed alpha
Helix 52	52	B	494	496	Right-handed 310
Helix 53	53	B	497	515	Right-handed alpha
Helix 54	54	B	520	523	Right-handed 310
Helix 55	55	B	524	533	Right-handed alpha
Helix 56	56	B	533	545	Right-handed alpha
Helix 57	57	B	563	584	Right-handed alpha
Helix 58	58	C	13	28	Right-handed alpha
Helix 59	59	C	64	82	Right-handed alpha
Helix 60	60	C	83	87	Right-handed 310
Helix 61	61	C	91	98	Right-handed alpha
Helix 62	62	C	123	131	Right-handed alpha
Helix 63	63	C	137	142	Right-handed 310
Helix 64	64	C	171	178	Right-handed alpha
Helix 65	65	C	188	212	Right-handed alpha
Helix 66	66	C	220	225	Right-handed alpha
Helix 67	67	C	227	240	Right-handed alpha
Helix 68	68	C	279	292	Right-handed alpha
Helix 69	69	C	309	315	Right-handed alpha
Helix 70	70	C	315	326	Right-handed alpha
Helix 71	71	C	331	336	Right-handed 310
Helix 72	72	C	351	367	Right-handed alpha
Helix 73	73	C	397	402	Right-handed alpha
Helix 74	74	C	407	409	Right-handed 310
Helix 75	75	C	410	416	Right-handed alpha
Helix 76	76	C	423	437	Right-handed alpha
Helix 77	77	C	444	450	Right-handed alpha
Helix 78	78	C	463	475	Right-handed alpha
Helix 79	79	C	477	493	Right-handed alpha
Helix 80	80	C	494	496	Right-handed 310
Helix 81	81	C	497	515	Right-handed alpha
Helix 82	82	C	520	523	Right-handed 310
Helix 83	83	C	524	533	Right-handed alpha
Helix 84	84	C	533	545	Right-handed alpha
Helix 85	85	C	563	581	Right-handed alpha
Helix 86	86	D	12	28	Right-handed alpha
Helix 87	87	D	64	82	Right-handed alpha
Helix 88	88	D	83	87	Right-handed 310
Helix 89	89	D	91	98	Right-handed alpha
Helix 90	90	D	123	131	Right-handed alpha
Helix 91	91	D	137	142	Right-handed 310
Helix 92	92	D	171	178	Right-handed alpha
Helix 93	93	D	188	212	Right-handed alpha
Helix 94	94	D	220	225	Right-handed alpha
Helix 95	95	D	227	240	Right-handed alpha
Helix 96	96	D	279	292	Right-handed alpha
Helix 97	97	D	309	315	Right-handed alpha
Helix 98	98	D	315	326	Right-handed alpha
Helix 99	99	D	331	336	Right-handed 310
Helix 100	100	D	351	366	Right-handed alpha
Helix 101	101	D	397	402	Right-handed alpha
Helix 102	102	D	407	409	Right-handed 310
Helix 103	103	D	410	416	Right-handed alpha
Helix 104	104	D	423	437	Right-handed alpha
Helix 105	105	D	444	450	Right-handed alpha
Helix 106	106	D	457	461	Right-handed 310
Helix 107	107	D	463	475	Right-handed alpha
Helix 108	108	D	477	493	Right-handed alpha
Helix 109	109	D	494	496	Right-handed 310
Helix 110	110	D	497	515	Right-handed alpha
Helix 111	111	D	520	523	Right-handed 310
Helix 112	112	D	524	533	Right-handed alpha
Helix 113	113	D	533	545	Right-handed alpha
Helix 114	114	D	563	583	Right-handed alpha
Helix 115	115	E	12	28	Right-handed alpha
Helix 116	116	E	64	82	Right-handed alpha
Helix 117	117	E	83	87	Right-handed 310
Helix 118	118	E	91	98	Right-handed alpha
Helix 119	119	E	123	131	Right-handed alpha
Helix 120	120	E	137	142	Right-handed 310
Helix 121	121	E	171	178	Right-handed alpha
Helix 122	122	E	188	212	Right-handed alpha
Helix 123	123	E	220	225	Right-handed alpha
Helix 124	124	E	227	240	Right-handed alpha
Helix 125	125	E	279	292	Right-handed alpha
Helix 126	126	E	309	315	Right-handed alpha
Helix 127	127	E	315	326	Right-handed alpha
Helix 128	128	E	331	336	Right-handed 310
Helix 129	129	E	351	367	Right-handed alpha
Helix 130	130	E	397	402	Right-handed alpha
Helix 131	131	E	407	409	Right-handed 310
Helix 132	132	E	410	416	Right-handed alpha
Helix 133	133	E	423	437	Right-handed alpha
Helix 134	134	E	444	450	Right-handed alpha
Helix 135	135	E	463	475	Right-handed alpha
Helix 136	136	E	477	493	Right-handed alpha
Helix 137	137	E	494	496	Right-handed 310
Helix 138	138	E	497	515	Right-handed alpha
Helix 139	139	E	520	523	Right-handed 310
Helix 140	140	E	524	533	Right-handed alpha
Helix 141	141	E	533	545	Right-handed alpha
Helix 142	142	E	563	581	Right-handed alpha
Helix 143	143	F	12	28	Right-handed alpha
Helix 144	144	F	64	82	Right-handed alpha
Helix 145	145	F	83	87	Right-handed 310
Helix 146	146	F	91	98	Right-handed alpha
Helix 147	147	F	123	131	Right-handed alpha
Helix 148	148	F	137	142	Right-handed 310
Helix 149	149	F	171	178	Right-handed alpha
Helix 150	150	F	188	212	Right-handed alpha
Helix 151	151	F	220	225	Right-handed alpha
Helix 152	152	F	227	240	Right-handed alpha
Helix 153	153	F	279	292	Right-handed alpha
Helix 154	154	F	309	315	Right-handed alpha
Helix 155	155	F	315	326	Right-handed alpha
Helix 156	156	F	331	336	Right-handed 310
Helix 157	157	F	351	367	Right-handed alpha
Helix 158	158	F	397	402	Right-handed alpha
Helix 159	159	F	407	409	Right-handed 310
Helix 160	160	F	410	416	Right-handed alpha
Helix 161	161	F	423	437	Right-handed alpha
Helix 162	162	F	444	450	Right-handed alpha
Helix 163	163	F	463	475	Right-handed alpha
Helix 164	164	F	477	493	Right-handed alpha
Helix 165	165	F	494	496	Right-handed 310
Helix 166	166	F	497	515	Right-handed alpha
Helix 167	167	F	520	523	Right-handed 310
Helix 168	168	F	524	533	Right-handed alpha
Helix 169	169	F	533	545	Right-handed alpha
Helix 170	170	F	563	581	Right-handed alpha
Helix 171	171	G	12	28	Right-handed alpha
Helix 172	172	G	64	82	Right-handed alpha
Helix 173	173	G	83	87	Right-handed 310
Helix 174	174	G	91	98	Right-handed alpha
Helix 175	175	G	123	131	Right-handed alpha
Helix 176	176	G	137	142	Right-handed 310
Helix 177	177	G	171	178	Right-handed alpha
Helix 178	178	G	188	212	Right-handed alpha
Helix 179	179	G	220	225	Right-handed alpha
Helix 180	180	G	227	240	Right-handed alpha
Helix 181	181	G	279	292	Right-handed alpha
Helix 182	182	G	309	315	Right-handed alpha
Helix 183	183	G	315	326	Right-handed alpha
Helix 184	184	G	331	336	Right-handed 310
Helix 185	185	G	351	367	Right-handed alpha
Helix 186	186	G	397	402	Right-handed alpha
Helix 187	187	G	407	409	Right-handed 310
Helix 188	188	G	410	416	Right-handed alpha
Helix 189	189	G	423	437	Right-handed alpha
Helix 190	190	G	444	450	Right-handed alpha
Helix 191	191	G	463	475	Right-handed alpha
Helix 192	192	G	477	493	Right-handed alpha
Helix 193	193	G	494	496	Right-handed 310
Helix 194	194	G	497	515	Right-handed alpha
Helix 195	195	G	520	523	Right-handed 310
Helix 196	196	G	524	533	Right-handed alpha
Helix 197	197	G	533	545	Right-handed alpha
Helix 198	198	G	563	581	Right-handed alpha
Helix 199	199	H	12	28	Right-handed alpha
Helix 200	200	H	64	82	Right-handed alpha
Helix 201	201	H	83	87	Right-handed 310
Helix 202	202	H	91	98	Right-handed alpha
Helix 203	203	H	123	131	Right-handed alpha
Helix 204	204	H	137	142	Right-handed 310
Helix 205	205	H	171	178	Right-handed alpha
Helix 206	206	H	188	212	Right-handed alpha
Helix 207	207	H	220	225	Right-handed alpha
Helix 208	208	H	227	240	Right-handed alpha
Helix 209	209	H	279	292	Right-handed alpha
Helix 210	210	H	309	315	Right-handed alpha
Helix 211	211	H	315	326	Right-handed alpha
Helix 212	212	H	331	336	Right-handed 310
Helix 213	213	H	351	367	Right-handed alpha
Helix 214	214	H	397	402	Right-handed alpha
Helix 215	215	H	407	409	Right-handed 310
Helix 216	216	H	410	416	Right-handed alpha
Helix 217	217	H	423	437	Right-handed alpha
Helix 218	218	H	444	450	Right-handed alpha
Helix 219	219	H	463	475	Right-handed alpha
Helix 220	220	H	477	493	Right-handed alpha
Helix 221	221	H	494	496	Right-handed 310
Helix 222	222	H	497	515	Right-handed alpha
Helix 223	223	H	520	523	Right-handed 310
Helix 224	224	H	524	533	Right-handed alpha
Helix 225	225	H	533	545	Right-handed alpha
Helix 226	226	H	563	584	Right-handed alpha

There are 32 sheets in PDB entry 4Q86. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	40	first strand
Strand 2	A	43	50	anti-parallel
Strand 3	A	53	62	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	153	160	anti-parallel
Strand 3	A	166	170	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	153	160	anti-parallel
Strand 3	A	371	375	anti-parallel
Strand 4	A	381	386	anti-parallel
Strand 5	A	183	186	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	248	first strand
Strand 2	A	257	264	anti-parallel
Strand 3	A	269	276	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	40	first strand
Strand 2	B	43	50	anti-parallel
Strand 3	B	53	62	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	153	160	anti-parallel
Strand 3	B	166	170	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	153	160	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	381	386	anti-parallel
Strand 5	B	183	186	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	248	first strand
Strand 2	B	257	264	anti-parallel
Strand 3	B	269	276	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	40	first strand
Strand 2	C	43	50	anti-parallel
Strand 3	C	53	62	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	153	160	anti-parallel
Strand 3	C	166	170	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	153	160	anti-parallel
Strand 3	C	371	375	anti-parallel
Strand 4	C	381	386	anti-parallel
Strand 5	C	183	186	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	248	first strand
Strand 2	C	257	264	anti-parallel
Strand 3	C	269	276	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	40	first strand
Strand 2	D	43	50	anti-parallel
Strand 3	D	53	62	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	109	first strand
Strand 2	D	153	160	anti-parallel
Strand 3	D	165	170	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	109	first strand
Strand 2	D	153	160	anti-parallel
Strand 3	D	371	375	anti-parallel
Strand 4	D	381	386	anti-parallel
Strand 5	D	183	186	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	248	first strand
Strand 2	D	257	263	anti-parallel
Strand 3	D	270	276	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	40	first strand
Strand 2	E	43	50	anti-parallel
Strand 3	E	53	62	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	109	first strand
Strand 2	E	153	160	anti-parallel
Strand 3	E	166	170	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	109	first strand
Strand 2	E	153	160	anti-parallel
Strand 3	E	371	375	anti-parallel
Strand 4	E	381	386	anti-parallel
Strand 5	E	183	186	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	248	first strand
Strand 2	E	257	264	anti-parallel
Strand 3	E	269	276	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	40	first strand
Strand 2	F	43	50	anti-parallel
Strand 3	F	53	62	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	109	first strand
Strand 2	F	153	160	anti-parallel
Strand 3	F	166	170	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	109	first strand
Strand 2	F	153	160	anti-parallel
Strand 3	F	371	375	anti-parallel
Strand 4	F	381	386	anti-parallel
Strand 5	F	183	186	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	248	first strand
Strand 2	F	257	264	anti-parallel
Strand 3	F	269	276	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	40	first strand
Strand 2	G	43	50	anti-parallel
Strand 3	G	53	62	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	107	109	first strand
Strand 2	G	153	160	anti-parallel
Strand 3	G	165	170	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	107	109	first strand
Strand 2	G	153	160	anti-parallel
Strand 3	G	371	375	anti-parallel
Strand 4	G	381	386	anti-parallel
Strand 5	G	183	186	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	248	first strand
Strand 2	G	257	264	anti-parallel
Strand 3	G	269	276	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	40	first strand
Strand 2	H	43	50	anti-parallel
Strand 3	H	53	62	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	107	109	first strand
Strand 2	H	153	160	anti-parallel
Strand 3	H	166	170	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	107	109	first strand
Strand 2	H	153	160	anti-parallel
Strand 3	H	371	375	anti-parallel
Strand 4	H	381	386	anti-parallel
Strand 5	H	183	186	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	244	248	first strand
Strand 2	H	257	264	anti-parallel
Strand 3	H	269	276	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Q86

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q86