Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q88 entry

There are 2 chains in PDB entry 4Q88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24GLN 373
B
 GLU 25LEU 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4Q88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 45Right-handed alpha
Helix 2
2
A
52 70Right-handed alpha
Helix 3
3
A
71 85Right-handed alpha
Helix 4
4
A
94 98Right-handed 310
Helix 5
5
A
111 115Right-handed 310
Helix 6
6
A
116 128Right-handed alpha
Helix 7
7
A
130 147Right-handed alpha
Helix 8
8
A
157 174Right-handed alpha
Helix 9
9
A
176 193Right-handed alpha
Helix 10
10
A
222 240Right-handed alpha
Helix 11
11
A
246 264Right-handed alpha
Helix 12
12
A
285 302Right-handed alpha
Helix 13
13
A
306 324Right-handed alpha
Helix 14
14
A
354 373Right-handed alpha
Helix 15
15
B
26 45Right-handed alpha
Helix 16
16
B
52 70Right-handed alpha
Helix 17
17
B
71 85Right-handed alpha
Helix 18
18
B
94 98Right-handed 310
Helix 19
19
B
111 115Right-handed 310
Helix 20
20
B
116 128Right-handed alpha
Helix 21
21
B
130 147Right-handed alpha
Helix 22
22
B
157 174Right-handed alpha
Helix 23
23
B
176 194Right-handed alpha
Helix 24
24
B
222 240Right-handed alpha
Helix 25
25
B
246 264Right-handed alpha
Helix 26
26
B
285 302Right-handed alpha
Helix 27
27
B
306 324Right-handed alpha
Helix 28
28
B
354 372Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4Q88.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
200 201anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il